Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01417 ATGGAGGATTCTTCAGCAGGTGAAGACCCTAAGACTTGTCCCCGTGGCCACTGGAGACCTGCTGAGGATGAAAAGCTTAGACAACTTGTTGAACAATATGGTGCTCAAAACTGGAATTCAATAGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTTGACCCAAGAATCAACAGAAGGCCGTTCACGGAAGAGGAAGAAGAGAGGTTACTCGCAGCTCATCGCATTCACGGGAACAAGTGGGCTCTCATAGCGAGGCTTTTCCCTGGTCGAACTGATAATGCTGTGAAGAACCACTGGCACGTTATAATGGCAAGAAAGCAAAGGGAACAATCCAAACTATGTGGGAAAAGAAGTTTCCAAGATGTATACAACGATTCCAACACGTTCCTCGAAAGGAGAACACCACAATCTCATCAAGACCTATTGTTTAGTACGAGATTTGGGTTGGAGAATGGAAGATTCTTTGACTTTCGGAGCCTCGATAAAAATAAGGATAATAACAACAATAATAATAGGATAGCTGCAGATACTACTCCCTCTAGTTCTCTGGCGTCTTGGAATTTTGCTTCTGTGCCAACCACCACAAACGGTTCTACTGTAGCGGATAGAAAAGGAGGGAGAGACTATTTCAACAGTTCTTGCTCTTCTAGTGTTTATCTCTCAGAATGTTCCAGAAGCTCAGATAGATCCTTTCTTTACAGAATTTATCCAAATCCTGCATTCTCTCTTCCCAACTACAAGAGGGTTGTTCCAACAAGTCCTTTTAGTTTCCTTGGTTCTGATAATGATGGAAGGATAAAGAGGGACTTGATGAGTTTTTGCGATAATAACTCATCCACATTCGCCAAGTTGAAGGCTTCCACACAGAAAGATCACCATCAGCAAACAACTGAAGAGGAGACCAATATCGAACCCAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTGGGTGTCTCTTCGTCATAA 993 0.428 MEDSSAGEDPKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQDVYNDSNTFLERRTPQSHQDLLFSTRFGLENGRFFDFRSLDKNKDNNNNNNRIAADTTPSSSLASWNFASVPTTTNGSTVADRKGGRDYFNSSCSSSVYLSECSRSSDRSFLYRIYPNPAFSLPNYKRVVPTSPFSFLGSDNDGRIKRDLMSFCDNNSSTFAKLKASTQKDHHQQTTEEETNIEPKEVPFIDFLGVGVSSS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01417 330 CDD SANT 18 59 IPR001005 -
Lapu9g01417 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 61 IPR017930 -
Lapu9g01417 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu9g01417 330 SMART sant 14 63 IPR001005 -
Lapu9g01417 330 SMART sant 66 114 IPR001005 -
Lapu9g01417 330 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Lapu9g01417 330 ProSiteProfiles Myb-like domain profile. 15 61 IPR001005 -
Lapu9g01417 330 Gene3D - 69 149 - -
Lapu9g01417 330 Pfam Myb-like DNA-binding domain 18 78 - -
Lapu9g01417 330 Gene3D - 15 66 - -
Lapu9g01417 330 MobiDBLite consensus disorder prediction 1 21 - -
Lapu9g01417 330 PANTHER MYB PROTEIN-RELATED 15 201 - -
Lapu9g01417 330 FunFam MYB transcription factor 68 138 - -
Lapu9g01417 330 CDD SANT 78 109 IPR001005 -
Lapu9g01417 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu9g01417 330 FunFam MYB transcription factor 15 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01417 Lapu-Chr9 28447365 28449456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01417 13 122 MYB Transcription Factor Family AT1G17950 84.545 2.54e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu9g01417 Myb_DNA-bind_6 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01417 K09422 - gmx:100817328 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01417 9 28447365 28449456 Lapu9g01417 9 28447365 28449456 ECH