Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01409 ATGTCGAGCACAGTTGGTCAGGTCATCAAATGCAAAGCCGCGGTGGCATGGGAGGCAGGGAAGCCACTGGTGATTGAAGAGGTAGAGGTGGCACCACCAGAGGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTGTACTTCTGGGAAGCCAAGGGCCAGACCCCATTGTTTCCTCGTATATTTGGTCACGAGGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTGAAACCGGGGGACCACGCCCTTCCTGTGTTTACAGGGGAGTGTGGGGAATGTGCACATTGTAAATCTGAGGAGAGCAACATGTGTGATCTGCTGAGGATCAACACTGATCGGGGTGTCATGATCCATGATGGTCAAACAAGATTTTCTATAAAGGGACAACCTATTTACCATTTTGTTGGTACCTCTACATTCAGTGAGTACACTGTGGTCCATGCTGGATGTGTTGCCAAAGTCAACCCTGCTGCCCCACTTGACAAAATTTGTGTTCTCAGTTGTGGAATATGCACAGGTCTTGGGGCTACTGTCAATGTTGCAAAACCAAAACCTGGTTCTTCGGTTGCCATTTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCAGCAAGAATCATTGGGGTTGATTTAGTTTCTAGCCGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCGAAAGACCATGACAAACCTGTACAAGAGGTAATTGCTGAAATGACAAATGGGGGTGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAGGCCATGATCTCAGCATTCGAATGTGTTCATGATGGTTGGGGTGTTGCAGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAATGAATCTTTTGAACGAGAGGACCCTTAAGGGTACCTTTTATGGTAACTACAAACCTCGCACTGATCTTCCTTCAGTTGTGGAGAAGTACATGAATGGGGATTTGGAACTCGACAAATTCATCACTCACACAGTTCCGTTCTCAGAAATTAACAAAGCTTTTGATTACATGCTGAAAGGGGAGTCTATCAGATGCATTATTCGTATGGGAGAGTAG 1143 0.4681 MSSTVGQVIKCKAAVAWEAGKPLVIEEVEVAPPEAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECAHCKSEESNMCDLLRINTDRGVMIHDGQTRFSIKGQPIYHFVGTSTFSEYTVVHAGCVAKVNPAAPLDKICVLSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGAARIIGVDLVSSRFEEAKKFGVNEFVNPKDHDKPVQEVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFYGNYKPRTDLPSVVEKYMNGDLELDKFITHTVPFSEINKAFDYMLKGESIRCIIRMGE* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01409 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 342 IPR036291 -
Lapu9g01409 380 SUPERFAMILY GroES-like 4 187 IPR011032 -
Lapu9g01409 380 Gene3D - 183 321 - -
Lapu9g01409 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Lapu9g01409 380 Pfam Zinc-binding dehydrogenase 206 330 IPR013149 -
Lapu9g01409 380 Gene3D - 19 370 - -
Lapu9g01409 380 FunFam Alcohol dehydrogenase class-P 183 321 - -
Lapu9g01409 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Lapu9g01409 380 CDD alcohol_DH_plants 9 377 - -
Lapu9g01409 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Lapu9g01409 380 PANTHER ALCOHOL DEHYDROGENASE 6 376 - -
Lapu9g01409 380 SMART PKS_ER_names_mod 20 376 IPR020843 GO:0016491
Lapu9g01409 380 FunFam alcohol dehydrogenase 1-like isoform X1 19 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01409 Lapu-Chr9 28310550 28313551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01409 37 370 Monolignol Biosynthesis Gene Families AT1G72680 25.000 8.78e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01409 K18857 - gmx:100801918 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01409 9 28310550 28313551 Lapu9g01409 9 28310550 28313551 ECH