Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01393 ATGTCAAGCAATGCATTAACTCTTTTTATCTTGCTTCTTAATATCTCCTTGTGTCCATCCATCTCTGCTCTGAACCAGGAAGGCCACTCTCTACTTTCATGGCTTTCAACCTTCAACTACTCCAACTCTGTCGCTGCCTTCTCTTCATGGGATCCAACCAACAACGATCCTTGCACATGGGATTACATAACATGTTCCAAAGAAGGGTTTGTGTCAGAGATCATAATAACATCCGTAGATATGCGTAGCAGCTTCCCCACGCAGCTCCTTTCATTTGGCCACCTCACCACTCTCATCATCTCAAATGGAAATCTCACTGGTGAGATTCCAGGTTCAGTGGGAAACTTGTCCTCCTTGGTCACTCTGGACCTTAGCTTCAATGCTTTGTCAGGAAGCATTCCAGAAGAAATAGGAATGCTATCTAAGCTGCAGTTGTTATTTTTGAATTCCAATTCTTTGAAGGGTGGAATTCCAACTACAATTGGAAACTGTTCAAAGCTTCAGCATCTGGCACTTTATGACAACCAGCTCTCTGGAATGATACCTGGAGAAATAGGCCAGTTGAGGGCTCTTGAAACTCTTAGAGCAGGAGGAAATCCAGGTATTCATGGAGAAATTCCAATGCAGATATCAGACTGCAAGGCCCTTGTTTTTCTGGGACTTGCTGTTACTGGGGTTTCTGGGGTGATTCCACCAAGCATAGGAGAGCTTAAGAATCTCAAGACACTTTCAGTCTACACAGCACATCTCACAGGCCATATCCCAGCAGAGATTCAGAACTGCTCAGCCTTGGAGGATTTGTTTCTGTATGAAAACCAGATTTCTGGAAACATTCCTTATGAATTGGGCTTCATGCAAAGCCTCAGGAGGGTGTTGCTGTGGCAGAACAATTTAACTGGCACCATTCCAGAAAGTCTTGGGAACTGTACAAATCTCAGGGTTATAGATTTCTCTTTGAATTCTCTGGGGGGTCAGATACCTGTGACTCTCAGTAATCTACTCTTACTGGAGGAGTTTCTTTTGTCCGATAATAGTATTTATGGAGACATACCTTCCTATGTTGGCAACTTTTCCAGGCTAAAGCAACTTGAATTGGATAACAACAAATTCTCCGGGAAGATTCCGCCTGTTATGGGGCAACTGAAGGAACTAACCCTGTTTTATGCTTGGCAGAATCAACTGAATGGAAGTATACCAACAGAACTATCCAACTGTGATAAACTTGAAGCACTTGATCTTTCACACAATTTCCTCACTGGTTCTATTCCAAAGGCACTCTTTCATCTAGTGAATTTAACTCAGTTGTTGCTGATATCAAACAGACTTTCAGGTCAAATTCCAGCTGATATTGGCAATTGCACCAGCTTGATCAGGTTACGGCTGGGATCAAACAACTTCACCGGTCAAATTCCACCAGAAATAGGTCATTTAAGCAGTTTAAGCTTTCTTGAGTTGTCAAATAATATACTCAGTGGAGATATTCCCTCTGAGATAGGTAACTGTTCTCATCTAGAATTGCTTGACTTGCACAGCAATATGCTGGAAGGAACCATTCCTTCCGCGTTGAAGTTCCTAGTTGGTCTTAATGTGTTAGATCTTTCTGCAAACAGAATAACTGGAAGCATTCCTGAGAATTTGGGCAAGCTTAAATCTCTAAATAAGTTTATTTTAAGTGGAAATCTTATCTCTGGTGTGATCCCAGGGACACTGGGGCTGTGTAAGGATTTGCAATTGCTGGATATAAGTAACAATAGGATCACTGGTGCTATTCCAGATGAGATTGGTCATTTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTTACTGGCCCCATTCCAGACACCTTCTCAAATCTCTCAAAACTGTCCATCTTGGACCTCTCTCACAACAAGCTCACAGGTACACTCAATGTACTGGTTAGTCTTGACAATCTTGTGTCTCTAAATGTCTCCTACAATAGTTTTTCTGGTTCTCTTCCTGATACAAAGTTCTTCCGGGATCTACCCTCCGCTGCATTTGCTGGTAACCCTGACCTTTGCATTAGTAAGTGCCATACAAGCGAAAATGGCCAAGGATTCAAGTCAATAAGAGATGTTATTGTTTACACTTTTCTTGGGGTTATTTTAATTTCTATTTTTGTCACTAGTGGAGTAATTTTAGCTCTCCGGATTCATGGGGGAAACTTTGGCAGGAATTTTGATAGTGATGAAATGGAGTGGTCTTTCACTCCATTCCAGAAAGTCAACTTCTCCATCGATGATATTTTAACAAAGTTGTCAGAATCAAACATTGTCGGAAAGGGTTACTCAGGAATTGTTTATCGCGTAGAGACTCCAATGAAACAGATTATTGCAGTGAAGAAGCTATGGCCAATAAAGAAGGAAGAGCCACCAGAGAGAGATCTGTTTACTGCAGAAGTTCAGACCCTTGGATCAATAAGACACAAGAATATAGTGAGACTTTTAGGATGCTGTGACAATGGAAGAACTAGATTGCTCTTGTTTGATTATATATGCAATGGAAGTTTGTTTGGACTGCTTCATGAAAAGAGATTATTCTTGGATTGGGATGCAAGGTATAAGATCATACTGGGAGCAGCTCATGGTTTAGAATATCTTCATCATGATTGTATCCCTCCAATTGTCCACAGGGACATTAAGGCTAACAACATCTTGGTAGGTCCACAATTTGAAGCTTTTCTTGCAGATTTTGGTCTTGCAAAACTCGTGAGTTCCTCAGAGTGTTCAGGAGCCTCTCATACAGTTGCAGGTTCTTATGGATACATTGCTCCCGAATATGGATACAGTTTAAGGATCACAGAAAAGAGTGATGTGTACAGTTTCGGTGTTGTACTTCTTGAGATATTGACGGGGATGGAACCAACTGATAACAGGATTCCAGAGGGTGCCCACATTGTCACTTGGGTTAGCAACGAAATCCGAGAGAAAAGAAGAGAATTTACATCTATCCTTGATCAGCAACTAGTACTGCAGAGTGGAACAAAAACCTCTGAGATGCTTCAAGTTCTGGGAGTGGCTCTTCTCTGTGTGAATCCATCACCAGAAGAGAGACCTACTATGAAAGACGTAACAGCAATGCTCAAGGAGATCAGGCATGAAAATGATGATTTCGAAAAACCAAATTTTCTCCATAAAGGCATGGTTGCGAATCCAAAAGAAACAGTTCACTGTTCAAGTTTCTCCAGATCATGTGAACCTTTAATAATAGAATCAACATCTTCTTCTTCTTCTTGCTAG 3267 0.4126 MSSNALTLFILLLNISLCPSISALNQEGHSLLSWLSTFNYSNSVAAFSSWDPTNNDPCTWDYITCSKEGFVSEIIITSVDMRSSFPTQLLSFGHLTTLIISNGNLTGEIPGSVGNLSSLVTLDLSFNALSGSIPEEIGMLSKLQLLFLNSNSLKGGIPTTIGNCSKLQHLALYDNQLSGMIPGEIGQLRALETLRAGGNPGIHGEIPMQISDCKALVFLGLAVTGVSGVIPPSIGELKNLKTLSVYTAHLTGHIPAEIQNCSALEDLFLYENQISGNIPYELGFMQSLRRVLLWQNNLTGTIPESLGNCTNLRVIDFSLNSLGGQIPVTLSNLLLLEEFLLSDNSIYGDIPSYVGNFSRLKQLELDNNKFSGKIPPVMGQLKELTLFYAWQNQLNGSIPTELSNCDKLEALDLSHNFLTGSIPKALFHLVNLTQLLLISNRLSGQIPADIGNCTSLIRLRLGSNNFTGQIPPEIGHLSSLSFLELSNNILSGDIPSEIGNCSHLELLDLHSNMLEGTIPSALKFLVGLNVLDLSANRITGSIPENLGKLKSLNKFILSGNLISGVIPGTLGLCKDLQLLDISNNRITGAIPDEIGHLQGLDILLNLSWNSLTGPIPDTFSNLSKLSILDLSHNKLTGTLNVLVSLDNLVSLNVSYNSFSGSLPDTKFFRDLPSAAFAGNPDLCISKCHTSENGQGFKSIRDVIVYTFLGVILISIFVTSGVILALRIHGGNFGRNFDSDEMEWSFTPFQKVNFSIDDILTKLSESNIVGKGYSGIVYRVETPMKQIIAVKKLWPIKKEEPPERDLFTAEVQTLGSIRHKNIVRLLGCCDNGRTRLLLFDYICNGSLFGLLHEKRLFLDWDARYKIILGAAHGLEYLHHDCIPPIVHRDIKANNILVGPQFEAFLADFGLAKLVSSSECSGASHTVAGSYGYIAPEYGYSLRITEKSDVYSFGVVLLEILTGMEPTDNRIPEGAHIVTWVSNEIREKRREFTSILDQQLVLQSGTKTSEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHENDDFEKPNFLHKGMVANPKETVHCSSFSRSCEPLIIESTSSSSSC* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01393 1088 ProSiteProfiles Protein kinase domain profile. 762 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g01393 1088 PRINTS Leucine-rich repeat signature 408 421 - -
Lapu9g01393 1088 PRINTS Leucine-rich repeat signature 622 635 - -
Lapu9g01393 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Lapu9g01393 1088 SUPERFAMILY L domain-like 53 394 - -
Lapu9g01393 1088 Gene3D Phosphorylase Kinase; domain 1 734 840 - -
Lapu9g01393 1088 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Lapu9g01393 1088 Gene3D Ribonuclease Inhibitor 23 202 IPR032675 -
Lapu9g01393 1088 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 431 1038 - -
Lapu9g01393 1088 Pfam Leucine Rich Repeat 407 428 IPR001611 GO:0005515
Lapu9g01393 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Lapu9g01393 1088 ProSitePatterns Protein kinases ATP-binding region signature. 768 796 IPR017441 GO:0005524
Lapu9g01393 1088 Gene3D Ribonuclease Inhibitor 220 324 IPR032675 -
Lapu9g01393 1088 Gene3D Ribonuclease Inhibitor 325 425 IPR032675 -
Lapu9g01393 1088 Gene3D Transferase(Phosphotransferase) domain 1 841 1057 - -
Lapu9g01393 1088 Gene3D Ribonuclease Inhibitor 432 693 IPR032675 -
Lapu9g01393 1088 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Lapu9g01393 1088 SUPERFAMILY RNI-like 293 661 - -
Lapu9g01393 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 841 1055 - -
Lapu9g01393 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 884 896 IPR008271 GO:0004672|GO:0006468
Lapu9g01393 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Lapu9g01393 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 738 840 - -
Lapu9g01393 1088 Pfam Protein kinase domain 764 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g01393 1088 Pfam Leucine rich repeat 502 562 IPR001611 GO:0005515
Lapu9g01393 1088 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Lapu9g01393 1088 Pfam Leucine rich repeat 604 657 IPR001611 GO:0005515
Lapu9g01393 1088 SMART LRR_typ_2 285 309 IPR003591 -
Lapu9g01393 1088 SMART LRR_typ_2 140 164 IPR003591 -
Lapu9g01393 1088 SMART LRR_typ_2 645 678 IPR003591 -
Lapu9g01393 1088 SMART LRR_typ_2 357 381 IPR003591 -
Lapu9g01393 1088 SMART LRR_typ_2 477 501 IPR003591 -
Lapu9g01393 1088 SMART LRR_typ_2 429 453 IPR003591 -
Lapu9g01393 1088 SMART LRR_typ_2 525 549 IPR003591 -
Lapu9g01393 1088 SMART LRR_typ_2 116 139 IPR003591 -
Lapu9g01393 1088 SMART LRR_typ_2 622 644 IPR003591 -
Lapu9g01393 1088 SMART serkin_6 762 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g01393 1088 SUPERFAMILY Protein kinase-like (PK-like) 745 1046 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01393 Lapu-Chr9 28187979 28192001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01393 23 1075 Receptor kinase-like Gene Family AT5G56040 47.048 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lapu9g01393 Pkinase 3.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01393 - - gmx:100807225 1926.37