Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01358 ATGAAAAAAATCCCCAATCCCATAATAGCGCTCTTCATCCTCTTGAACCCTCCACTAGCACTGGCAAACATAGAAACATGTTTAGACAGCGTTTGCCAGGATGGTGAGCCACTAATTCGATTCCCCTTCCGCATAGAAGAAAAACACGCAGAACCATGCGGATACCCAGGCTTCATAGTCTCCTGCACCCAAAACGCCCAAACACTCCTCAACCTACCAAATTGGGGTCCACTCAAAATCCAATCTATAAACTACGCCGCGCAGCAACTGTGGGTGAACGATCCCAACAACTGCCTCCCCAAACGCCTCCTCTCTCTCAATCTCTCCGCCTCTCCCTTCCGCGCCGTTTACCGCCAACAGTTCACCTTCTTCAACTGCTCCATCAAATTGGAGAACCTCGTTCGTCGATACCGTCCCATAGGTTGTCTCAGCGATTCTCCCAATTACGTCGTTTTCGCCACGCCTTCTCCGACTGTGTTTGGCCACTTGTCTTCTGTGTGTGATTTGGTGGCCACAGTGAAGGTGCCTGTGCAGTCACCGTTTTACGATCAAGTCACGTCGTCGGAACTCGGCGAGGATCTGCGACTTTCGTGGGATTCGCCGGCGTGCGGGAGGTGCGAGTCCCACGGTGGCCGGTGCGGCTTCAAGAGTGACGACACTTTTGAGCTTGACTGCTCCGGTTTCCCTTCCAAAGGGATTTCCCGTGGTGCCCGTTACGCCATAGCCATATGCATAGGGGTACCCGCTATGTTATGCTCCTTTGGAGTACTGAGTTGCATCTGCAGCTGGCTCAAAATGGGAAACCGCAATGGACCTTGGGCTCACGAGACGGTGGCGGATTTTGAGGCTCTTGTGGGGTCACAGCCCAGCACAGTGTCGGGCCTGGATAGACCCACAATCGAATCGTACCCAAAAATAGTTATAGGTGAGAACAGAGGGTTACCCAAGAAGGGTGAGAAAAGGTGCTCAATATGTCTCTCAGAGTACATGCCAAAAGAGACAGTGAAAAGCATACCTGAATGTGGACACTGCTTTCATGCACAATGCATCGATGAATGGCTTCCACTGAACGCCTCCTGCCCAATTTGCCGAACTTCTCCCCGAAAGTTTCCACAACCGCGTGCTCGATCATCACCATAG 1140 0.5202 MKKIPNPIIALFILLNPPLALANIETCLDSVCQDGEPLIRFPFRIEEKHAEPCGYPGFIVSCTQNAQTLLNLPNWGPLKIQSINYAAQQLWVNDPNNCLPKRLLSLNLSASPFRAVYRQQFTFFNCSIKLENLVRRYRPIGCLSDSPNYVVFATPSPTVFGHLSSVCDLVATVKVPVQSPFYDQVTSSELGEDLRLSWDSPACGRCESHGGRCGFKSDDTFELDCSGFPSKGISRGARYAIAICIGVPAMLCSFGVLSCICSWLKMGNRNGPWAHETVADFEALVGSQPSTVSGLDRPTIESYPKIVIGENRGLPKKGEKRCSICLSEYMPKETVKSIPECGHCFHAQCIDEWLPLNASCPICRTSPRKFPQPRARSSP* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01358 379 CDD RING-H2_EL5-like 321 364 - -
Lapu9g01358 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 368 IPR013083 -
Lapu9g01358 379 SUPERFAMILY RING/U-box 317 367 - -
Lapu9g01358 379 Pfam Wall-associated receptor kinase C-terminal 166 225 IPR032872 -
Lapu9g01358 379 Pfam Wall-associated receptor kinase galacturonan-binding 27 94 IPR025287 GO:0030247
Lapu9g01358 379 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 367 IPR046948 -
Lapu9g01358 379 Pfam Ring finger domain 321 364 IPR001841 -
Lapu9g01358 379 ProSiteProfiles Zinc finger RING-type profile. 322 364 IPR001841 -
Lapu9g01358 379 SMART ring_2 322 363 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01358 Lapu-Chr9 27756742 27773927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01358 25 367 C3H Transcription Factor Family AT2G46495 36.494 4.73e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01358 - - vun:114163980 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01358 9 27756742 27773927 Lapu9g01358 9 27756742 27773927 ECH