Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01354 ATGATTATCAAGCGGAACTTGAAATCCCAAATGCCGAATCTGAAACGGGTCAAACTCGGCGACTCGGTGGGCGAGGACGACGATTGTTCCTACGCTCGGAAGAAGAGAAAGACCAACGGTTACTACCCTCTGAACCTTCTTGGCGACGTTATTCCGGTGAGTTTTCACGGGCTGTTAGGCGCCTGCGTGTCGGAGAAGGGGTTCTCCGCGACGTGGTGCACGCAGGCATCGTGCAACGGAGTGGAATCGAACGCGAAAAACAACGTCGTGGTGGAAGCGAAGAAGAAGAGCGAGGTTCAGCGGCCACCTCTGGTTAGGACTTCGAGAGGACGAGTTCAGGTTCTGCCTTCGCGGTTCAACGACTCTGTTATTGATAATTGGAGGAAAGAGAGCAAGACTAGTAGCGGCTTGCGTGATGGTGATTATGATGATGAGTTTGAATGCAAGAAGGAGAAGCTCAGCTTCAGGGCACCCAAGATTTGTAGTAATCAGAAGAAGGGAAAAAATGATGAGAAAACGGGTTCTAAGGCTCGTAAGTTATCGGCATTGTGCAAGAGTTATGAGAGGAGCAATTGTTCGAGTTTGCCTGGTGGTGGGGCATTGGCCTTGAGGCATGGTGGGATTGTGGTTGAAGAAGACGAGAGGGAAAGGTTTTTGGAGGTGGAAGGAGTTGGTTTGATGGGTTTGAAGGAGAATAATGGGGAGAGGAGAAATGGGTTGTTTGGGCCAGAAGATTTTTATGCAGGTGACATAGTGTGGGCCAAAGCTGGGAGAAAGGAACCTTTTTGGCCAGCTATTGTTATTGATCCTGTGACTCAGGCACCTGAGTTGGTTCTCAGGTCTTGTATAGCTGATGCCGCTTGTGTCATGTTTCTTGGGTACGCAGGGAATGAGAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTTCCATTTGTGGATTATGTGGACAGGTTTCAGGGGCAGTCTGAGTTGAGTTTCTATAATCCTTCTGACTTCCAAATGGCGATAGAGGAGGCATTTTTGGCGGAGAGGGGTTTCACAGAGAAGTTGATAGCAGATATAAATACAGCAGCTACTACCAATGGTTATGATGATTCTATTCTGAAAGCCTTTCAGGAGGTCACTCGTTCAAACCGTTATGCAGGATATCGTTTTCTGAACCAGGATTTATTTGATAAGAAAGAGACGCGGCCCTGTGAAGCCTGTGGGTTGAGCCTTCCTCACAAGATGTTAAAGAAAACAAGGGATTCAAGGCCTGGTGGCCAATTCCTATGTAGAACATGTGCTAGGTTAACAAAATCAAAGCATTATTGTGGCATATGCAAGAAGGTTTGGAATCATTCAGATAGTGGAAGTTGGGTGCGCTGTGATGGATGCAAAGTGTGGGTGCATGCAGAATGTGACAAAATTTCTAGCAACCATTTCAAGAATCTTGAAGGCACTGATTATTTCTGTCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACATCCAAAAGTCAAGTGGAACAAAAACAGTGAGCAGCTAGTGCTTCCAAATAGGGTCACTGTTCTCTGCAATGGTGTGGAAGGTGTATATTTTCCAAGCCTTCATTCAGTTGTGTGTAAGTGTGGGTTTTGTGGGGCAGAAAAGCAAGCACTTAGTGAATGGGAACGACACACAGGTTCCAAATCCAGAAATTGGAGAACAAGTATTAGGGTCAAAGACTCCATGCTACCTCTGGAACAATGGATGCTGCAGTTGGCCGAATTTCATGCTATTGCTCAAGTTCCTGCCAAACCTAAGAAACCTTCTCTAAAAGAACGAAAGCAGAAGTTGCTTACTTTCTTGCAAGAGAAGTACGAACCTGTTTATGCCAAGTGGACTACAGAACGCTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTATAACAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAGGCTTGCGAAACGCCACAAATCAAGCGGGAGTGTTGTCTTTGTCCTGTTAAAGGTGGTGCTCTGAAGCCAACTGATGTTGACACATTATGGGTTCATGTAACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTAAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCATCAAGGGCCGGTTATCGAATGGAGTTGCATTGTTTGGAGAAAAATGGCAGGCAGACAACAAAAATGGTCTCTTATTGTGCTTACCACAGGGCTCCCAATCCAGATACTGTTTTGATTATGCAAACCCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTCCAAACTAAGAAAAAAACTGGTTCAAGGTTAATCTCGTCTAACAGAAGAAAGCAAGATGTCACTCCTATTGATAACCCTGAGCATGAGCCGTTTTCTGCTGCTAGGTGCCGTATCTTTCAAAGAACAAACCATACCAAAAAGAGAGCTGCGGATGAAGCTGTTTCTCATCAAGTGAGGGGTCACTATCATCATCCTTTAGATGCAATACAGAGTTTAAATACACCCAGAGTGGTGCATGAACCCCAGGCATTTTCTTCATTCAGAGAACGCCTTTACTACTTGCAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCGGGCATACATGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTGGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCAGATTTGAGGGAGGCACGCTATAGGTTAGAAGGCAAAGATTGTTATCTGTTTAAGATAAGTGAAGAAGTGGTAGTAGATGCCACTGATAAAGGGAATATAGCACGGCTGATTAATCATTCATGTATGCCAAATTGCTATGCAAGAATCATGAGTGTTGGTGATGATGAGAGCCGGATTGTTCTCATTGCTAAGACTATAGTGTCCGCCGGTGACGAGTTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTCAAAGTCCCCTGCTTATGTAAAGCTCCAAACTGCCGGAAATTCATGAATTAG 3201 0.443 MIIKRNLKSQMPNLKRVKLGDSVGEDDDCSYARKKRKTNGYYPLNLLGDVIPVSFHGLLGACVSEKGFSATWCTQASCNGVESNAKNNVVVEAKKKSEVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKTSSGLRDGDYDDEFECKKEKLSFRAPKICSNQKKGKNDEKTGSKARKLSALCKSYERSNCSSLPGGGALALRHGGIVVEEDERERFLEVEGVGLMGLKENNGERRNGLFGPEDFYAGDIVWAKAGRKEPFWPAIVIDPVTQAPELVLRSCIADAACVMFLGYAGNENQRDYAWVKHGMIFPFVDYVDRFQGQSELSFYNPSDFQMAIEEAFLAERGFTEKLIADINTAATTNGYDDSILKAFQEVTRSNRYAGYRFLNQDLFDKKETRPCEACGLSLPHKMLKKTRDSRPGGQFLCRTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSNHFKNLEGTDYFCPTCKAKFDFELSDSEKPHPKVKWNKNSEQLVLPNRVTVLCNGVEGVYFPSLHSVVCKCGFCGAEKQALSEWERHTGSKSRNWRTSIRVKDSMLPLEQWMLQLAEFHAIAQVPAKPKKPSLKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPQIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKTGSRLISSNRRKQDVTPIDNPEHEPFSAARCRIFQRTNHTKKRAADEAVSHQVRGHYHHPLDAIQSLNTPRVVHEPQAFSSFRERLYYLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTIVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN* 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01354 1066 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 495 IPR013083 -
Lapu9g01354 1066 Pfam SET domain 935 1040 IPR001214 GO:0005515
Lapu9g01354 1066 Gene3D SET domain 824 1066 IPR046341 -
Lapu9g01354 1066 MobiDBLite consensus disorder prediction 829 843 - -
Lapu9g01354 1066 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 684 IPR013083 -
Lapu9g01354 1066 SMART PostSET_3 1050 1066 IPR003616 -
Lapu9g01354 1066 Pfam PHD-finger 647 681 - -
Lapu9g01354 1066 ProSiteProfiles Zinc finger PHD-type profile. 438 494 IPR019787 -
Lapu9g01354 1066 ProSiteProfiles PWWP domain profile. 248 317 IPR000313 -
Lapu9g01354 1066 Pfam PHD-finger 440 493 IPR019787 -
Lapu9g01354 1066 SUPERFAMILY FYVE/PHD zinc finger 633 697 IPR011011 -
Lapu9g01354 1066 CDD PWWP_AtATX3-like 247 351 - -
Lapu9g01354 1066 SUPERFAMILY SET domain 914 1066 IPR046341 -
Lapu9g01354 1066 ProSiteProfiles Zinc finger PHD-type profile. 632 683 IPR019787 -
Lapu9g01354 1066 SMART PHD_3 634 681 IPR001965 -
Lapu9g01354 1066 SMART PHD_3 440 492 IPR001965 -
Lapu9g01354 1066 SMART PHD_3 745 801 IPR001965 -
Lapu9g01354 1066 SMART set_7 924 1047 IPR001214 GO:0005515
Lapu9g01354 1066 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 685 803 IPR013083 -
Lapu9g01354 1066 MobiDBLite consensus disorder prediction 829 850 - -
Lapu9g01354 1066 FunFam Histone-lysine N-methyltransferase 684 803 - -
Lapu9g01354 1066 CDD SET_SETD1-like 911 1062 - -
Lapu9g01354 1066 SUPERFAMILY FYVE/PHD zinc finger 439 495 IPR011011 -
Lapu9g01354 1066 CDD PHD_ATX3_4_5_like 634 680 IPR042011 -
Lapu9g01354 1066 ProSitePatterns Zinc finger PHD-type signature. 635 680 IPR019786 -
Lapu9g01354 1066 FunFam Histone-lysine N-methyltransferase 622 683 - -
Lapu9g01354 1066 FunFam Histone-lysine N-methyltransferase 898 1066 - -
Lapu9g01354 1066 ProSiteProfiles Post-SET domain profile. 1050 1066 IPR003616 -
Lapu9g01354 1066 Pfam PWWP domain 249 343 IPR000313 -
Lapu9g01354 1066 Pfam PHD-zinc-finger like domain 688 800 - -
Lapu9g01354 1066 Gene3D - 243 349 - -
Lapu9g01354 1066 CDD PHD_TCF19_like 441 491 - -
Lapu9g01354 1066 CDD ePHD_ATX3_4_5_like 689 800 IPR041955 -
Lapu9g01354 1066 ProSiteProfiles Extended PHD (ePHD) domain profile. 686 801 IPR034732 -
Lapu9g01354 1066 PANTHER PHD FINGER PROTEINS 92 512 - -
Lapu9g01354 1066 ProSiteProfiles SET domain profile. 924 1041 IPR001214 GO:0005515
Lapu9g01354 1066 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1066 IPR025780 -
Lapu9g01354 1066 SUPERFAMILY Tudor/PWWP/MBT 241 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01354 Lapu-Chr9 27695353 27705933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01354 635 800 C2H2 Transcription Factor Family AT3G14740 32.948 9.49e-20 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu9g01354 zf-HC5HC2H_2 2.2e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01354 - - gmx:100811337 1994.93