Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01350 ATGGACTATGGAAGACTGGATCCTGCTGCCTCCCCGCCCACTCGCACTCTCACCATCAATACAAGACCTTCCGGAAAGAAGAAGATTGCCTTGTTGTCACTCTTTGGGGTCGTATTAATCGCAGCATCGGCGGTTACGGCCGTTGCGCTCCTCTCTCATGTCACTACCAGAGCCGACGGCTCAAGGCTTCGTCAGAAGCTTACACAAGCCATTTCACGCACCTGCAGTAAAACTCGATTTCAGACTGTGTGCGTCAATTCGCTCCTAGATTTTCCGGGATCCCAGGCGGCATCGGAGAAGGACCTCGTCCACATTTCCTTCAACGTCACGCTGCAGCACTTCTCCAAGGCGCTCTACACTTCCGCTGCAATTTCCTACTCCGCCATGGATCCCCGCGTCCGCTCCGCCTACGAGGACTGCCTCGAGCTCCTCGACGATTCCGTCGACGCGCTCGCCCGCTCCCTCAGCACTGTCTCCCTCGGTGCCGTTGGCTCCGCCAACGAGGACGTCCTCACGTGGCTCAGCGCCGCGCTCACCAACCAGGACACCTGCGCGGAGGGCTTCGCCGACGTCGACGGTCCCGTTAAGGACCAGATGAGCAACAATCTCAGGGATTTGTCGGAGCTCGTCAGCAATTGCCTCGCCATTTTCTCAGCCGCGGCCAACGGCGACGACTTCGCCGGCGTTCCCATTCAGAACAAGAGACGGTTGATGGCAATGCGAGACGATAATTTCCCGAGATGGTTGAATCGGCGAGATAGGAGATTGCTGAGCTTGCCTCTGTCGGCGATACAGGCCGATATCGTGGTTTCCAGTGACGGTAACGGAACCGTTAAGACCATCGCGGAGGCCATTAAGAAGGTCCCGGAATATAGTTCACGCCGCTTCATTATCTACGTCAGGGCAGGAAGGTATGAAGAGGACAATTTAAAGGTGGGGAGGAAGAAAACAAATGTAATGTTCGTAGGGGATGGAAAGGGTAAGACCATCATCGCAGGTGGGAAAAATTATATGGAAAACCTTACCACATTTCACACGGCATCCTTCGCTGCTAGTGGTTCTGGTTTCATCGCAAAAGACATGACATTCGAGAACTACGCCGGACCGGGGAAGCACCAAGCGGTGGCTCTCCGTGTCGGAGCCGACCACGCGGTGGTGTACCGCTGCAACGTCATCGGATACCAGGACACAATGTATGTCCACTCCAACCGTCAATTTTTCCGGGAATGCGACATTTACGGAACCGTGGACTTCATATTCGGCAATGCTGCAGTGGTGTTCCAGAACTGCACTCTCTGGGCCCGCAAGCCCATGGCCCTACAGAAGAACACCATCACGGCCCAAAATCGCAAAGACCCGAATCAGAACACGGGCATTTCGATCCACAACTGTCGGATCCTTGCCACATCGGATCTAGAAGCATCTAAGGGTAGCTATCCCACTTATCTGGGTCGTCCCTGGAAACTTTACGCTAGAACAGTCTACATGCAATCCTACATAGGGGATCACGTGCACCCACGTGGGTGGCTAGAGTGGAACACGTCGTCGTTCGCTTTAGACACGTTGTACTATGGTGAATACATGAATTCTGGGCCGGGTGCGGCCCTCAGCCAACGGGTGAATTGGGCCGGGTATCGGGCCATCAATTCCTCCGTTGAAGCTTCTAAATTCACGGTTGGCCAATTCATATCGGGCTCGTCGTGGTTGCCGTCGACCGGAGTTTCATTCCTTGCTGGGTTATCAACCTGA 1749 0.5466 MDYGRLDPAASPPTRTLTINTRPSGKKKIALLSLFGVVLIAASAVTAVALLSHVTTRADGSRLRQKLTQAISRTCSKTRFQTVCVNSLLDFPGSQAASEKDLVHISFNVTLQHFSKALYTSAAISYSAMDPRVRSAYEDCLELLDDSVDALARSLSTVSLGAVGSANEDVLTWLSAALTNQDTCAEGFADVDGPVKDQMSNNLRDLSELVSNCLAIFSAAANGDDFAGVPIQNKRRLMAMRDDNFPRWLNRRDRRLLSLPLSAIQADIVVSSDGNGTVKTIAEAIKKVPEYSSRRFIIYVRAGRYEEDNLKVGRKKTNVMFVGDGKGKTIIAGGKNYMENLTTFHTASFAASGSGFIAKDMTFENYAGPGKHQAVALRVGADHAVVYRCNVIGYQDTMYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCTLWARKPMALQKNTITAQNRKDPNQNTGISIHNCRILATSDLEASKGSYPTYLGRPWKLYARTVYMQSYIGDHVHPRGWLEWNTSSFALDTLYYGEYMNSGPGAALSQRVNWAGYRAINSSVEASKFTVGQFISGSSWLPSTGVSFLAGLST* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01350 582 Pfam Plant invertase/pectin methylesterase inhibitor 70 216 IPR006501 GO:0004857
Lapu9g01350 582 FunFam Pectinesterase 261 580 - -
Lapu9g01350 582 Pfam Pectinesterase 267 565 IPR000070 GO:0030599|GO:0042545
Lapu9g01350 582 Gene3D - 261 580 IPR012334 -
Lapu9g01350 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 220 IPR035513 -
Lapu9g01350 582 FunFam Pectinesterase 67 220 - -
Lapu9g01350 582 NCBIfam pectinesterase inhibitor domain 43 218 IPR006501 GO:0004857
Lapu9g01350 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 218 IPR035513 -
Lapu9g01350 582 SMART PMEI_2 66 216 IPR006501 GO:0004857
Lapu9g01350 582 PANTHER PECTINESTERASE 43 570 - -
Lapu9g01350 582 SUPERFAMILY Pectin lyase-like 262 579 IPR011050 -
Lapu9g01350 582 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Lapu9g01350 582 CDD PMEI-like_3 75 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01350 Lapu-Chr9 27624518 27629239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01350 20 581 Carbohydrate Esterase AT3G49220 67.965 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01350 - - gmx:100808236 957.592