Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01345 ATGGACTTGGAAAGCGTTGAGTGTGTGTCATCCTCGGATGGCATGGATGAGGATGAGATCCACACCAATCATCACCACTCTGAGTTTTCTTCCACAAAGCCTCGCAATGGAGGCACCAATAACGTTAATTCTGTGGGCCCTACCGCCCTTGCTCCGGCAACCAGCGTCCATGAGTTGCTGGAATGTCCTGTGTGTACTAATTCAATGTACCCTCCAATTCACCAGGCTAGGAAAGCAAAAATTAGTTTTTTGCAGTGTCACAACGGCCACACACTCTGTTCCACCTGTAAAACAAGGGTGCATAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAAAAGGTGGCTGAATCACTTGAGCTACCTTGCAAGTATTACTCGCTTGGATGTTCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGTAATTATAGACCATATAGTTGCCCTTATGCTGGATCCGAGTGTTCTGTTGTCGGGGATATTCCCTTCCTTGTTGCTCATTTAAGGGACGATCATAAAGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCGCGAGAAGTAGAGAACGCAACCTGGATGCTGACAGTATTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGGATGGCACCTGTTTACATGGCATTCCTTCGTTTTATGGGTGATGAAAACGAGGCTCGGAATTATAGCTATAGCCTAGAGGTTGGGGCCAATGGTAGGAAACTTATTTGGGAGGGTACGCCGAGGAGTGTTCGAGATAGCCACCGTAAAGTCAGGGATAGCCATGATGGGCTCATTATTCAGAGAAATATGGCCCTATTTTTCTCTGGTGGGGACAGAAAGGAGCTGAAACTCAGAGTTACAGGAAGAATATGGAAGGAACAACAGAATTCGGATGCTGGTGTGTGCATGCCAAATCTCTGTAGTTGA 1005 0.4577 MDLESVECVSSSDGMDEDEIHTNHHHSEFSSTKPRNGGTNNVNSVGPTALAPATSVHELLECPVCTNSMYPPIHQARKAKISFLQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCSEIFPYYSKLKHETVCNYRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNSDAGVCMPNLCS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01345 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 114 IPR013083 -
Lapu9g01345 334 MobiDBLite consensus disorder prediction 14 31 - -
Lapu9g01345 334 FunFam E3 ubiquitin-protein ligase SINAT5-like 181 313 - -
Lapu9g01345 334 ProSiteProfiles Zinc finger RING-type profile. 62 108 IPR001841 -
Lapu9g01345 334 Pfam Seven in absentia protein family 114 313 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lapu9g01345 334 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 319 - -
Lapu9g01345 334 FunFam E3 ubiquitin-protein ligase SINAT3 11 123 - -
Lapu9g01345 334 SUPERFAMILY TRAF domain-like 125 317 - -
Lapu9g01345 334 SUPERFAMILY RING/U-box 61 113 - -
Lapu9g01345 334 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 179 313 IPR008974 GO:0005515
Lapu9g01345 334 ProSiteProfiles Zinc finger SIAH-type profile. 125 185 IPR013010 GO:0008270
Lapu9g01345 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 178 IPR013083 -
Lapu9g01345 334 MobiDBLite consensus disorder prediction 1 48 - -
Lapu9g01345 334 CDD RING-HC_SIAHs 60 108 - -
Lapu9g01345 334 MobiDBLite consensus disorder prediction 32 48 - -
Lapu9g01345 334 FunFam E3 ubiquitin-protein ligase SINAT3 124 180 - -
Lapu9g01345 334 CDD Sina 186 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01345 Lapu-Chr9 27570935 27575245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01345 30 320 C3H Transcription Factor Family AT2G41980 72.852 3.40e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01345 K04506 - gmx:100810573 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01345 9 27570935 27575245 Lapu9g01345 9 27570935 27575245 ECH