Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01319 ATGGCAAGCGAATTATTAACTCGTGCCTCACTTGCCCCAACATCGGAGTTACTTTCTCGAACCATATTAGCTGTATTTGACACTGTCAAAGCAGCCAATGAGGTTGTCATTCACAAGGAAATTTTTAAGAGTTTCTCTATTCATTTGGAGAATGTTTCATTTATACTAAAGTCTTTGTCAAAGGAAGACATACACAATGCCTGGAGCTTGCAAAAGGCTATGGCTGGTCTCAACCTTGAGGTTGAAGTTGCTAAGCAGCTTTCTGTTGAGTGCAACAGTAGAAGTAAGGTTTATCTTTTAATCAATTCAAGAAAGATCGTTACACGCTTGAATTGTTGTACCAAGAATATAGGTCGCGCCATATCCCTTATCCCTTTGGCCTCTTTAGACATTAACTCTGGTTTAAATCAACAGATAAGTGAGTTGTGTCAGAAAATGTTACATGCTAATTATCAAACAGCTGCAACAGATGAGGAGATTTTGAACAAAGTTGAGACAGCAATTCAAGAGGGAAATGTTGATCGGTCGTATGCGAATCAGTTGCTAACTGGCACTGCACATGCCATTGGGGTCCCTGTGGAGCATGGTGCTTTGAAGAGAGAATTCGAAGATCTGAAAAATGATATGGAAAATGCCAAGTCAAGGATGGACATGGCAGAAGCTCTACACATGGAGCAGATTATTGCAGTGCTTGGAAAGGCTGATTTGATAACTTCAGCACAAGAGAAGGAAACTAAGTATTTTGAGAAGAGAAATTCCTTGGGAGAGACACCATTGGCAGCTCTGCATTCCTTTCACTGCCCGATCTCTCATGAAATTATGGTGGACCCCGTGGAGACTTCCTCTGGGAAGACATTTGAGAGAAGTGAAATACAGAAATGGTTTGATGAAGGGAACAATCTCTGTCCCTTGACCAGGTTGCCTCTGGATACTAAAATCCTTAGGCCAAATAAAACTCTTAAAATGTCTATTCAAGAATGGAAGGATAGAAACACTATGATTACCATTTCTACCATGAAATCTGAACTTGAAACAAATGATGAAGAGGGAGTGGTCCAGTCCTTAGACAAATTACATGGCCTATGCTTAGAAAGAGAGGTGCACCGAGAATGGTTAAAACTTGAGAATTACATTACTGTTCTTATTGGACTTCTTAGTTCTAAAAATCGTGAAATAAGGAAGCGTGTTCTACTCATCCTGTCTATGCTTGTAATGGATAACGCAGAGAACAAGGAAGATATTGCTAGAGTGGATAATGCACTTGAATTGATTGTTCGCTCACTTTCACGACAAGCCGAGGAGCGCAAGTTGGCAGTGGGTTTGCTGTTGGAGCTATCTAAAAGTAAAATGGTGTGCAGTCTCATAGGAAACATTCAAGGAAGCATACTTCTGTTGGTAACTATGTTAAACAGTGATGATGACGAAGCAGCCAAAAATGCACATGAGCTTCTGGAGAACCTCTCTTTCCTTGATAAGAATGTCATAGAGATGGCAAAGGCAAACTATCTGAAGCCTTTACTGCTGAAACTTTCTACAGGACCAGAAAATATGAAAAGAGTCATGACTGAAACTTTGTCAGAAATTACATTAATCGACCAGAATAAATTGTCCTTGGTCAAAGATGGGGCATTGCAACCTCTTCTTCAGCTGCTCTTAAATGATGATTTGGAAATTAAGAAAGTGTCTGTCAAAGCATTACTACAGCTCTCAAGCATGCCAGAGAATGGCCTGCAGATGATTAAGGAAGGTCTTGCTCAACCACTGTTGGAACTGCTATACTGTCACAGTTTACAGTCACCTACTCTGCTTGAACAGGTTGTTGCTACAATAATGCATCTTGCCATGTCAACAACTCACCAACAAGCTGAAGCAGAACAGGTTTCATTCTTAGATTCCGAGGAAGACATATACAAATTCTTCTCTCTAATTTCTTTGACAGAACCTGAGATACAAATCAAGATCATCAAAGCTTTCCAGGCGTTGTGCCAATCTTTCTGTGGCTTCCGAATCAGAAAGAGGTTGAGACAGATATCGGCAGCTAAATTATTGGTAAACTTATCGGAGATTAATACTCAAGAAGTGCGGGTCAATGTCCTGAAGCTTTTCTATTGCTTGACAGAAGACGATGATCATGGCAACATCTCATCACATATAACTGAAAGATTCATTAAAGTCTTGCTTACCATCATTGAGGCTTCTGGTGACGCAGAAGAGATGATTACTGCTATGGGTATCATCTCTAAACTACCGCAGGAGTCTCAAATGACCCAGTGGCTTCTAGATTCTGGGGCACTCAAAACTATTTTGACTTGTCTTACCGATCAACATAGCCATGCCTTACACAAAATCATAGAGCATTCTGTTCAAGCTCTTTGTCGTTTCACTGTCTCAACAAATCTGGACTGGCAGAAGAGTGTGGCTTTAGAAGGCATAATCCCAGTGCTGGTGCAATTGCTGCTTTCTGGAACACCCTTTACGAAACAAAATGCAGCCATTTCAATCAAGCAGCTTTCAGAAAGTTCTTACCGCTTGAGCGAGCCGATAAAGAAGCCGGGTATTTTCAAATGCTGCCTTGTAGCCCAAGAAACTGGTTGTCCAGCACATTTAGGCACCTGCTCAGTCGAGTCTTCATTCTGCATTTTGCAAGCTAATGCCTTGGAGCCCCTTGTGCGCTTGCTTCGTGAGACAGATGTTGGAATCTGCGAAGCTTCCTTAGATGCGATACTAACTTTGGTTGATAGTGAAGCACCACAGAGTGGAAGTAAGGTACTTGCAAATTCAGATGCTATTGCACCAATGATACATTTATTGAGTGTTCAAGCTCCCAGGTTGCAGGAAAAAATTCTAATAGCTTTAGAACGAATTTTTCAACTAGAAGAAGTGGGAAATAAGTACAAAATTGTGGCTACAATGCCCTTGGTAGGCATAACTCAAGGGAAAGATAGCCGTTTGAGAAGTCTTGCTGGCAGAGGCCTTGCTCAATTGGGCATACTTAATCAACAGTCTTCTTATTTTTAG 3018 0.4105 MASELLTRASLAPTSELLSRTILAVFDTVKAANEVVIHKEIFKSFSIHLENVSFILKSLSKEDIHNAWSLQKAMAGLNLEVEVAKQLSVECNSRSKVYLLINSRKIVTRLNCCTKNIGRAISLIPLASLDINSGLNQQISELCQKMLHANYQTAATDEEILNKVETAIQEGNVDRSYANQLLTGTAHAIGVPVEHGALKREFEDLKNDMENAKSRMDMAEALHMEQIIAVLGKADLITSAQEKETKYFEKRNSLGETPLAALHSFHCPISHEIMVDPVETSSGKTFERSEIQKWFDEGNNLCPLTRLPLDTKILRPNKTLKMSIQEWKDRNTMITISTMKSELETNDEEGVVQSLDKLHGLCLEREVHREWLKLENYITVLIGLLSSKNREIRKRVLLILSMLVMDNAENKEDIARVDNALELIVRSLSRQAEERKLAVGLLLELSKSKMVCSLIGNIQGSILLLVTMLNSDDDEAAKNAHELLENLSFLDKNVIEMAKANYLKPLLLKLSTGPENMKRVMTETLSEITLIDQNKLSLVKDGALQPLLQLLLNDDLEIKKVSVKALLQLSSMPENGLQMIKEGLAQPLLELLYCHSLQSPTLLEQVVATIMHLAMSTTHQQAEAEQVSFLDSEEDIYKFFSLISLTEPEIQIKIIKAFQALCQSFCGFRIRKRLRQISAAKLLVNLSEINTQEVRVNVLKLFYCLTEDDDHGNISSHITERFIKVLLTIIEASGDAEEMITAMGIISKLPQESQMTQWLLDSGALKTILTCLTDQHSHALHKIIEHSVQALCRFTVSTNLDWQKSVALEGIIPVLVQLLLSGTPFTKQNAAISIKQLSESSYRLSEPIKKPGIFKCCLVAQETGCPAHLGTCSVESSFCILQANALEPLVRLLRETDVGICEASLDAILTLVDSEAPQSGSKVLANSDAIAPMIHLLSVQAPRLQEKILIALERIFQLEEVGNKYKIVATMPLVGITQGKDSRLRSLAGRGLAQLGILNQQSSYF* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01319 1005 SMART arm_5 407 447 IPR000225 GO:0005515
Lapu9g01319 1005 SMART arm_5 917 957 IPR000225 GO:0005515
Lapu9g01319 1005 SMART arm_5 572 615 IPR000225 GO:0005515
Lapu9g01319 1005 SMART arm_5 531 571 IPR000225 GO:0005515
Lapu9g01319 1005 SMART arm_5 752 796 IPR000225 GO:0005515
Lapu9g01319 1005 SMART arm_5 873 913 IPR000225 GO:0005515
Lapu9g01319 1005 SMART arm_5 490 530 IPR000225 GO:0005515
Lapu9g01319 1005 SMART arm_5 799 839 IPR000225 GO:0005515
Lapu9g01319 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 338 IPR013083 -
Lapu9g01319 1005 Gene3D - 863 971 IPR011989 -
Lapu9g01319 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Lapu9g01319 1005 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Lapu9g01319 1005 SUPERFAMILY ARM repeat 876 996 IPR016024 -
Lapu9g01319 1005 Coils Coil 195 222 - -
Lapu9g01319 1005 Pfam Armadillo/beta-catenin-like repeat 532 570 IPR000225 GO:0005515
Lapu9g01319 1005 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Lapu9g01319 1005 SUPERFAMILY RING/U-box 250 333 - -
Lapu9g01319 1005 SUPERFAMILY ARM repeat 533 856 IPR016024 -
Lapu9g01319 1005 SUPERFAMILY ARM repeat 335 624 IPR016024 -
Lapu9g01319 1005 CDD RING-Ubox_PUB 265 314 IPR045210 -
Lapu9g01319 1005 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Lapu9g01319 1005 Gene3D - 339 638 IPR011989 -
Lapu9g01319 1005 Gene3D - 646 849 IPR011989 -
Lapu9g01319 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1005 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01319 Lapu-Chr9 27288043 27293342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01319 264 1005 U-box Gene Family AT1G20780 27.159 1.96e-56 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01319 - - gmx:100818273 1612.43