Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01302 ATGATGGAGGAAGATGAGAATATTCAAGCATCAAAGGGAAAAAATGTGGAAAGCTTCACCTGCTTGGAGGCACCAAGGAAGAAAACCAAGATAGAAAACAAGAGGAGGTTTAGTGATGAACAGATAAGATCACTAGAATGCATATTTGAGACAGAGTCAAAGCTTGAGCCAAGGAAGAAGATGCAACTGGCTAGAGATCTTGGCTTGCAGCCTTGCCAAGTTGCCATATGGTTCCAAAATAGAAGGGCAAGGTGGAAATCAAAACACATAGAGCAAGAATACAGGAAACTCAAGGATGAATATGACAATTTGACATCTAGATTTGAGTCCCTAAAGAAAGAGAAGGAGTCTTTGCAAGTAGAGTTGCAGAAGCTAAGTAATTTGGTGGTGTCATCTCATGATGGTGGAAGAGAAGACAAGGGTGCCAAAGAACATAGCACAGAGGATGGTGGTTCGAGCAGTGGATACAACAGTTGGAAGCTCGAAGCAAAACCAAGGTTTTCAAATGAGGGTTTGGAAGAGAGAATAGGTGTGTATTCGGATGATCAAAATGAGAATAGCATCACAAGGAGTGAGAAATCTGAGGACAAAGCACACCAGCTTCTCAGAATGGATGATAATGATCACGTTGAGATGTCATTAGCATCACTTGAAAAATGGTACCGTAGTGTGGACCCTAATGGCATCTTGGACCAGTCATGTAGCAGCTCTCAATGGTTAGATTTCTGGACTTGA 735 0.419 MMEEDENIQASKGKNVESFTCLEAPRKKTKIENKRRFSDEQIRSLECIFETESKLEPRKKMQLARDLGLQPCQVAIWFQNRRARWKSKHIEQEYRKLKDEYDNLTSRFESLKKEKESLQVELQKLSNLVVSSHDGGREDKGAKEHSTEDGGSSSGYNSWKLEAKPRFSNEGLEERIGVYSDDQNENSITRSEKSEDKAHQLLRMDDNDHVEMSLASLEKWYRSVDPNGILDQSCSSSQWLDFWT* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01302 244 Pfam Homeobox associated leucine zipper 88 128 IPR003106 GO:0006355|GO:0043565
Lapu9g01302 244 Gene3D - 22 85 - -
Lapu9g01302 244 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 26 188 IPR045224 GO:0003700
Lapu9g01302 244 PRINTS Lambda-repressor HTH signature 59 68 IPR000047 GO:0003677
Lapu9g01302 244 PRINTS Lambda-repressor HTH signature 68 84 IPR000047 GO:0003677
Lapu9g01302 244 SMART HOX_1 31 92 IPR001356 GO:0003677
Lapu9g01302 244 MobiDBLite consensus disorder prediction 133 147 - -
Lapu9g01302 244 CDD homeodomain 34 89 IPR001356 GO:0003677
Lapu9g01302 244 Gene3D - 86 130 - -
Lapu9g01302 244 Coils Coil 80 128 - -
Lapu9g01302 244 Pfam Homeodomain 34 86 IPR001356 GO:0003677
Lapu9g01302 244 ProSiteProfiles 'Homeobox' domain profile. 28 88 IPR001356 GO:0003677
Lapu9g01302 244 MobiDBLite consensus disorder prediction 129 159 - -
Lapu9g01302 244 SUPERFAMILY Homeodomain-like 25 88 IPR009057 -
Lapu9g01302 244 ProSitePatterns 'Homeobox' domain signature. 63 86 IPR017970 GO:0000981|GO:0006355
Lapu9g01302 244 FunFam Homeobox-leucine zipper protein ATHB-7 16 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01302 Lapu-Chr9 27128675 27130629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01302 33 244 Homeobox Transcription Factor Family AT2G46680 40.693 1.06e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu9g01302 Homeodomain 4.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01302 K09338 - gmx:100793260 412.92