Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01288 ATGGCCGTTCCTGAGAATGTTGGGGCAAAAATCGGTTCTTCGAGTCAAAATTTGGACAACAGTGTAGTGTCGTCGGACTCAGGCGAGGTTGAGCAATCGAAACCCAGAAGCGGGTCTATCAACGGCGATCAGAAGCTGAACAACGGCGTGTTCAACCACCAAGACAGAGTTCCGAGCACTACGTCAGTGCCCAATAGCAATTATAACTACAAGGTCCAAATGGGTCAGATGCACACAAATGGGGTGAACAATGATGGATATGGGATGAATGAGGAGAATGGGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCCCATCGTTAACCAATACTCATGGCTTTTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATTTTATGCTCCCTAATAACTTTGGCAATACTAATGGACAAACTAACAATAGAAGGAGGAAGAATGGCTATAATCCTGGGAAGCGAAGAGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGTCAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAATTCTATTCTTCGATTTGCCTTCGTTGAGTTTACAGATGAAGATGGAGCAAGGGCTGCCTTGAGCTTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTGCCTTCAAAAACTGCCATCGCACCTGTGAATCCAACATTTTTGCCTAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATCGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGGCTGAGAGTGCAATTGCTGCTCTAAGCTGTAGTGGGGTGATTCTTGGTTCATTGCCCATAAGGGTAAGTCCATCGAAGACACCAGTCCGATCGCGTGCTCCTCGTCCTTCCATGCACTGA 1122 0.4501 MAVPENVGAKIGSSSQNLDNSVVSSDSGEVEQSKPRSGSINGDQKLNNGVFNHQDRVPSTTSVPNSNYNYKVQMGQMHTNGVNNDGYGMNEENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNTHGFLAGPNAGFGYTNNFMLPNNFGNTNGQTNNRRRKNGYNPGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEDGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRSRAPRPSMH* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01288 373 CDD RRM2_CID8_like 281 362 IPR034825 -
Lapu9g01288 373 FunFam Polyadenylate-binding protein-interacting protein 11 153 265 - -
Lapu9g01288 373 SUPERFAMILY RNA-binding domain, RBD 159 265 IPR035979 GO:0003676
Lapu9g01288 373 CDD RRM1_CID8_like 186 265 IPR034823 -
Lapu9g01288 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 263 IPR000504 GO:0003723
Lapu9g01288 373 MobiDBLite consensus disorder prediction 1 64 - -
Lapu9g01288 373 SUPERFAMILY RNA-binding domain, RBD 276 367 IPR035979 GO:0003676
Lapu9g01288 373 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 107 366 - -
Lapu9g01288 373 Pfam Ataxin-2 C-terminal region 109 123 IPR009818 -
Lapu9g01288 373 MobiDBLite consensus disorder prediction 9 64 - -
Lapu9g01288 373 FunFam Polyadenylate-binding protein-interacting protein 10 279 357 - -
Lapu9g01288 373 SMART rrm1_1 286 357 IPR000504 GO:0003723
Lapu9g01288 373 SMART rrm1_1 189 259 IPR000504 GO:0003723
Lapu9g01288 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 253 IPR000504 GO:0003723
Lapu9g01288 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 354 IPR000504 GO:0003723
Lapu9g01288 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 361 IPR000504 GO:0003723
Lapu9g01288 373 Gene3D - 150 265 IPR012677 -
Lapu9g01288 373 Gene3D - 272 367 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01288 Lapu-Chr9 26911752 26919363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01288 187 356 Eukaryotic Initiation Factors Gene Family AT1G34140 25.287 2.63e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01288 - - gmx:100788102 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01288 9 26911752 26919363 Lapu9g01288 9 26911752 26919363 ECH