LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu9g01286	ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACCTGCCTTCTGACATAAGAGAGTCGGAAATTGAAGATCTATTCTACAAGTATGGCCGTATAATGGATATTGAATTGAAGATTCCTCCTCGCCCTCCATGTTATTGTTTTGTTGAGTTTGATAATGCTCGAGATGCTGAAGATGCAATTCGAGGTAGAGATGGATACAACTTTGATGGTTGTCGATTAAGGGTGGAGCTTGCTCATGGAGGTAGAGGACCGTCATCAAGTGATCGACGTGGATATGGAGGAAGTGGTGGGGGTGGGGGTGGGGGTGGGGGTGGTGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCTTCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGAGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTATTCGAAAACTGGATGACACCGAGTTTAGAAATCCTTGGGCAAGAGCCTATATTCGGGTGAGAAAGTATGAGGGTAGTCGTTCTAGGAGCCGCAGCAGAAGCCCCAGCAGGAGTAGAAGTCCGAAAAGAGTCAGAAGTAGGTCTTTGGAGCGTTCTGTGTCAAGGTCACGATCTAGATCAAGGTCAGCATCACCAATCAAATCTTCAAGGCCAAGATCACGCTCACGGTCTGGATCTCCTCGCCAGGTATTTATAGTTTTAAAAATTAGATGA	789	0.455	MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGSGGGGGGGGGGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYEGSRSRSRSRSPSRSRSPKRVRSRSLERSVSRSRSRSRSASPIKSSRPRSRSRSGSPRQVFIVLKIR*	263

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu9g01286	262	Gene3D	-	2	116	IPR012677	-
	Lapu9g01286	262	MobiDBLite	consensus disorder prediction	196	253	-	-
	Lapu9g01286	262	FunFam	serine/arginine-rich splicing factor SR34A-like	119	196	-	-
	Lapu9g01286	262	CDD	RRM2_SF2_plant_like	119	194	-	-
	Lapu9g01286	262	SMART	rrm1_1	120	189	IPR000504	GO:0003723
	Lapu9g01286	262	SMART	rrm1_1	8	78	IPR000504	GO:0003723
	Lapu9g01286	262	MobiDBLite	consensus disorder prediction	230	252	-	-
	Lapu9g01286	262	SUPERFAMILY	RNA-binding domain, RBD	6	189	IPR035979	GO:0003676
	Lapu9g01286	262	MobiDBLite	consensus disorder prediction	81	109	-	-
	Lapu9g01286	262	PANTHER	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	7	251	-	-
	Lapu9g01286	262	FunFam	serine/arginine-rich splicing factor SR34A-like	2	118	-	-
	Lapu9g01286	262	Gene3D	-	119	196	IPR012677	-
	Lapu9g01286	262	Pfam	Fruit fly transformer protein	174	255	IPR010519	GO:0006397\|GO:0046660
	Lapu9g01286	262	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	9	76	IPR000504	GO:0003723
	Lapu9g01286	262	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	121	183	IPR000504	GO:0003723
	Lapu9g01286	262	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	119	197	IPR000504	GO:0003723
	Lapu9g01286	262	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	82	IPR000504	GO:0003723
	Lapu9g01286	262	MobiDBLite	consensus disorder prediction	215	229	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu9g01286	Lapu-Chr9	26844215	26850449	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu9g01286	6	177	Eukaryotic Initiation Factors Gene Family	AT4G34110	25.843	1.59e-07	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu9g01286	K12890		-	gmx:100800653	363.999