Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01277 ATGGGGGAGGTGGTGATGAGTGGAGAGAAGTCAGTGAGAGTGGAGAAGGAAGAGAGTGGGAGTGGGAGCAAGGGTGAATTGAAGGGCTTGATGAGGTGGGAGAAGTTTCTGCCCAGGATGATTTTGAGGGTGTTATTGGTTGAATCCGATGACTCCACAAGACAGATTATAGCCGCGCTTCTCAGAAAATGCAGCTACCAAGTGGCTGCTGTTCCAGATGGGTTGAAGGCGTGGGAATTACTCAAGGGAAGACCGGGCAATGTTGATCTAATACTGACGGAAGTGGATTTGCCATCCATATCTGGCTACGCACTTCTTACGTTAATTATGGAGCATGATTTTTGCAAAAACATCCCTGTCATAATGATGTCTTCCCAAGATTCAATTAGCACGGTGTACAATTGCATGCTAAGGGGTGCTGCCGATTATCTTGTTAAGCCCATTAGAAAAAATGAACTGAGAAATTTGTGGCAACATGTTTGGAGAAGACAATCATCAGCTACTGGCATAAATGGTCCTCAAGATGAGAGTGTTGCACAGCAGAAGGTTGAAGCCACTGCTGAAAATAATGCTGCTAGTAATCATTCAAGTGGTGATGCTGCTTGTATTCAGAGAAATATGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACTAAGCCTGACTTGGAAGCTGAGAGTGGCCCAGTTGATAACATGCAGGAATTTTCTCCGCTGAAATGTGGGGAAGAATATCCAAGTGGAGCAGAGACACAAGAGGTCGAAACATGCATTCGTTTAGGACCGACATTGATGATGAGTGACAGTCATGCTGGAGGATTAACTATGCACAGAAATGGTGAGGCAAGCACAACTAATGACAAGGAGGCTGATCCAGAGCATTTGGGGAATGCTAGCGTCAGTGGTGAGGCTCATGACAATCACTATGTACAAATTAACTCTTCCAAGGAAGCTATTGACTTGATAGGAGCATTTCATACTTATCCCAACTGCACGCTAAAAAATCCCACAGTTGATTGCACGGGCAAGGCTGACCTTTCTCCTCAATTAGATCTTTCTCTGAGAAGATATCGTCCCTGCAGCTTTGAGAATGAACTCACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCCTTCAAGCGGTATACTAACAGGCAATTGCAAGTATTGACGCCTGCAGCGTTAATTAACTTCTCTGATCAACAAAGAGATCAGAGAGCAAATGGTGAGAAAAGCATCTCACACATTGCTACTGGTTGCAACTCCGATAGTTCAACACCTGGTACGCAAAGATGTATCGTGTCTCCTACAGTCCAATCAAAAGAGTCTGAACTTGCAACCTCACACTCTCAGCAAGGGCATTCTCTCCCAATTCCAGTAAAGGGTGTAAGGTTCAATGATCTATGCACAACATACGGTTCTGTACTTCCTTCAATGTTTCGTACACAGTCAGGTCCACCAGCAATGCCAAGTCCGAGTTCAGTTGTGCTCCTTGAACCAAACTTTCAAGTAAATGCATTTTACCAGTCAAACATGAAAGAGAGTAGTTCGGAGCAGCTTTATGAACCTATTTGTCCAAATGGAAACAGTTCCCAGAACCACATTGTGTACACACAGGAACACAAATCAGAACATGCAGAGGATCGAGGGCATATCTCTCCTACGACTGATCAAAGTGTGTCGAGTAGTTTCTGTAATGGAAACGCAAGCCATCTTAACAGCATCGGTTATGGAAGCAACTGTGGAAGTAGCAGCAATGTTGATCAAGTTAACACTTTCAGGGTAGCTTCAGAGAGCAAGAACGAGGACCTCACAAACAATGCAAACTCTCACCGATCCATCCAAAGAGAAGCAGCACTAAACAAATTCCGGTTGAAAAGAAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCCAGAGTGAAAGGACAATTTGTTCGTCAAGTTCATCCTGATCCTCTTGTTGCAGAACAAGATGGTAAAGAATATGATCATTCACAGATTTCTGACTCACTGGAGAGGAGATAG 2070 0.4401 MGEVVMSGEKSVRVEKEESGSGSKGELKGLMRWEKFLPRMILRVLLVESDDSTRQIIAALLRKCSYQVAAVPDGLKAWELLKGRPGNVDLILTEVDLPSISGYALLTLIMEHDFCKNIPVIMMSSQDSISTVYNCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSATGINGPQDESVAQQKVEATAENNAASNHSSGDAACIQRNMELIEKGSDAQSSCTKPDLEAESGPVDNMQEFSPLKCGEEYPSGAETQEVETCIRLGPTLMMSDSHAGGLTMHRNGEASTTNDKEADPEHLGNASVSGEAHDNHYVQINSSKEAIDLIGAFHTYPNCTLKNPTVDCTGKADLSPQLDLSLRRYRPCSFENELTEERHTLMHSNASAFKRYTNRQLQVLTPAALINFSDQQRDQRANGEKSISHIATGCNSDSSTPGTQRCIVSPTVQSKESELATSHSQQGHSLPIPVKGVRFNDLCTTYGSVLPSMFRTQSGPPAMPSPSSVVLLEPNFQVNAFYQSNMKESSSEQLYEPICPNGNSSQNHIVYTQEHKSEHAEDRGHISPTTDQSVSSSFCNGNASHLNSIGYGSNCGSSSNVDQVNTFRVASESKNEDLTNNANSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDPLVAEQDGKEYDHSQISDSLERR* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01277 689 ProSiteProfiles CCT domain profile. 620 662 IPR010402 GO:0005515
Lapu9g01277 689 Pfam CCT motif 620 662 IPR010402 GO:0005515
Lapu9g01277 689 MobiDBLite consensus disorder prediction 9 25 - -
Lapu9g01277 689 MobiDBLite consensus disorder prediction 405 435 - -
Lapu9g01277 689 SMART REC_2 42 157 IPR001789 GO:0000160
Lapu9g01277 689 Pfam Response regulator receiver domain 44 155 IPR001789 GO:0000160
Lapu9g01277 689 MobiDBLite consensus disorder prediction 274 303 - -
Lapu9g01277 689 ProSiteProfiles Response regulatory domain profile. 43 161 IPR001789 GO:0000160
Lapu9g01277 689 MobiDBLite consensus disorder prediction 213 234 - -
Lapu9g01277 689 SUPERFAMILY CheY-like 42 166 IPR011006 -
Lapu9g01277 689 MobiDBLite consensus disorder prediction 646 689 - -
Lapu9g01277 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR 43 208 IPR045279 GO:0009736
Lapu9g01277 689 MobiDBLite consensus disorder prediction 415 435 - -
Lapu9g01277 689 CDD psREC_PRR 44 147 - -
Lapu9g01277 689 Gene3D - 40 234 - -
Lapu9g01277 689 MobiDBLite consensus disorder prediction 1 25 - -
Lapu9g01277 689 MobiDBLite consensus disorder prediction 668 689 - -
Lapu9g01277 689 MobiDBLite consensus disorder prediction 167 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01277 Lapu-Chr9 26760027 26764822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01277 13 664 Response Regulator Gene Family AT5G24470 39.851 1.29e-123 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lapu9g01277 Response_reg 4.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01277 K12130 - gmx:100777119 1160.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01277 9 26760027 26764822 Lapu9g01277 9 26760027 26764822 ECH