Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01251 ATGGCTCCCAAGGTTGTGCAAATGGTGAACAGAGTTGGTGATGAGCCTGAGAAGAATGAGGTTAAGACTTTGTCATTCTTCAAACTCTTGAGATATGCTGATTTTGTAGATTGGATTCTGATGGGTTTGGGAAGTGTTGGTTCCATTGTGCATGGCATGGCACTTCCTGTGGGGTATCTCTTGTTAGGGAAAGCTCTTAATGCATTTGGAAACAATATCCAAGACCTAGATGCCATGGTTAAGGCTCTTAAAAAGATTGTTCCATTTGTGTGGTATATGGCCATAGCCACATTTCCTGCAGGGGTACTTGAGATTGGTTGTTGGATGTATGCAAGTGAAAGACAGTTATTGCGGCTAAGGTTAGCATATCTAAGAGCAGTGCTGAACCAAGAGATAGGAGCTTTTGATACAGAGTTAACAAGTGGAAAAGTCATCAGTGGAATAAGCAAGCACATGAGTGTCATACAAGATGCCATTGGTGAGAAGTTGGGTCACTTCACATCTAGCTGTGCAACTTTCTTTGCTGGAATTGTGATTGCTGCCATATGCTGTTGGGAAGTGACGCTTCTCTGTTTAGTGGTTGTCCCACTTATTCTTATCATTGGGGCAATTTACACCAAGAAAATGAACAGCATATCAACCTCCAAAATGCTTTTCCATTCTGAAGCTACATCTATGATAGAGCAGACAATATCACAAATAAAAACAGTTTATGCTTTTGCTGGGGAGAGCTCTGCAATCAAATCCTTTACAGAGAACATGGATAAGCAATATATTATAAGCAAAGGGGAGGCACTTGTGAAAGGAGTTGGGACAGGGACGTTGCAAACAGTGACTTTCTGTTCTTGGGCTCTCATTGTATGGGTTGGAGCCGTTGTGGTCAGAGCAGGAAGAGCAACAGGAGGAGACATAATAGCTGCAGTGATGAGTATTCTCTTTGGTGCCATATCACTCTCTTATGCAGCACCAGACATGCAAATATTCAATCAGGCAAAAGCTGCAGGATATGAAGTTTTCCAGGTGATCCAAAGAAAGCCTCTGATAAGTAATGAATCAGAAGGGAAGATGCCTGACAAAATCAAAGGTGACATTGACTTTCACGATGTTCACTTTTCCTACCCATCACGGCCAGACAAACCTATCCTTCATGGACTGTCCTTGTCAATTCCAGCAGGAAAGACAGTAGCACTAGTTGGTAGCAGTGGCTGTGGAAAGAGCACTGTTATTTCCCTGGTTAGCAGATTTTACGATCCCTCAAGAGGAGCTATCTTTATTGATCATCACAACATCAAGGATCTTAATCTGAAGTTCCTTCGACGAAACATAGGGGCCGTTTCCCAAGAGCCATCACTCTTTGCAGGCACCATCAATGATAACTTGAAAGTGGGGAAAATGGATGCAGATGATCAAGAGATTAAGAAGGCAGCAGTAATGTCAAATGCACACTCTTTCATATCTCAACTGCCTAATCAGTACCTAACAGAGGTTGGAGAAAGGGGCGTCCAATTATCAGGAGGCCAAAAACAGAGAATTGCAATAGCCCGAGCCATTCTGAAAAATCCTCCAATCCTTTTGCTTGATGAAGCCACTAGCGCCCTCGATTCAGAGTCTGAAAATCTGGTTCAAGAAGCACTTGAGACAGCTACGCAGGGAAGGACTGTCATCTTGATTGCACACAGGCTGTCAACAGTTGTAAATGCAGATATGATTGCTGTAGTCGAGAATGGACAAGTTGCGGAAACAGGAACACACCAGAGTTTGTTAGACACAAGCAGATTCTATAGTACATTATTTAGCATGCAGAACCTTGAACCAGTTCCTGACTCTAGAGCTACAATTTCAAAGAATAAAAGTGCCCGCCAAGAAGATTTTCCTATTGAAACTAGACCACCAGTAGAGGTGCAGGGAGAGGTCCAAAGAAATATTACCGAGTACTCTGTGCTAAAGGAACAAAACAAAATGAGCAGCGAAAAAAGAAATATATTTTTCAGAATTTGGTTTGGTTTTAAAAAGAGGGATCTGGTGAAGATTTCTATTGGCTCATTCGCAGCAGCTTTCTCTGGCATCTCAAAGCCATTTTTTGGGTTCTTCATCATCACCATAGGAGTAGCATACTTTAAGGAAGATGCAAAAACGAAAGTTGGACTTTATTCAGCAATCTTCACTGCAGTAGGGATGCTTTCATTATTCAGCCACACCTTCCAGCATTATTTCTTCGGAGTGGTTGGAGAAAAGGCCATGGCAAATCTCAGACATGCCCTGTATTCAGGTCTGCTACGTAATGAAGTAGGTTGGTTTGACAAATCAGAGAATACTGTCGGTTCATTGACTTCACGCATTATCACTGACACTGCGATGGTCAAAGTCATCATTGCTGATAGAATGTCTGTAATCCTGCAATGTGTTTCCTCCATACTAATAGCAACAGTTGTCAGCATGGCTGTCAACTGGAGAATGAGTCTGGTAGCTTGGTCTGTGATGCCCTGCCACTTCATAGGTGGTCTTATTCAAGCCAAGTCTGCCAAAGGATTTTCTGGTGACTACTCCGCTGCACATTCTGAGCTTGTTGCTCTTGCATCAGAATCTACAACCAACATAAGGACTATTGCCTCATTTTGTCATGAAGAACAAGTAATGAGGAAAGCCAAAATATCCCTGGAAATTCCAAAGAAAAAGTATAGGAAAGAAAGTATCAAATATGGGATCATTCAAGGCTTCTCCCTTTGCTTATGGAACATTGCACATGCTGTTGCTCTGTGGTACACAACAATTCTAGTTGACAGACGTCAAGCCAGCTTTGAAAATGGAATAAGATCATACCAAATTTTTTCTCTCACAGTTCCTTCAATCACAGAATTATACACACTGATCCCAACTGTCATCTCTGCTATCAATATACTGACCCCAGCATTCAAAACCCTTGATCGTAAAACGCAAATTGAACCAGACACACCAGATGATTCACAACCTGAGAAGATCCAAGGAAATGTAGAATTTGAAAATGTAAAATTCAACTACCCTTCAAGACCAGAAGTCACAGTTCTTGATAATTTCAGTTTACAAATTGAAGCCGGATTGAAGGTAGCTTTTGTAGGACCAAGTGGAGCTGGAAAATCCTCTGTTTTGGCCCTTTTACTAAGATTTTATGATCCACAGGGAGGAAAGGTATTAATTGATGGGAAAGACATACGGAAATATAATCTAAGATGGTTAAGGACACAAATAGGACTAGTGCAACAAGAACCACTGCTTTTTAATTGCTCAATTAGAGACAACATTTGCTATGGCAATAATGGGACTTCTGAAAGTGAAATAGTGGAGGTTGCTAAAGAAGCAAACATACATGAATTTGTAAGTAATCTACCGAATGGATATAGCACGGTAGTTGGAGAGAAAGGCTGCCAGCTTTCCGGAGGTCAAAAGCAAAGAATAGCCATTGCTAGAACAATACTAAAGAAGCCTGCAATTTTACTCCTTGACGAAGCAACAAGTGCTCTTGATGCTGAGTCTGAAGGAATTATAGTAAATGCTCTAAACGCAATACATATGAAGGAAGACAGTGGCTTGCGTTCAAGAACCACCCAGATAACAGTAGCTCATAGGCTTTCCACAGTGATAAACTCAGATACTATAATTGCCATGGACAAAGGTAAAGTTGTACAAATGGGTTCCCACTCAACCCTAGTAGCAGCAGAGTCAGGACTTTATTCAAGGATATTCAGGTTACAGAGCTTCAATGAAACTTCATAG 3750 0.4139 MAPKVVQMVNRVGDEPEKNEVKTLSFFKLLRYADFVDWILMGLGSVGSIVHGMALPVGYLLLGKALNAFGNNIQDLDAMVKALKKIVPFVWYMAIATFPAGVLEIGCWMYASERQLLRLRLAYLRAVLNQEIGAFDTELTSGKVISGISKHMSVIQDAIGEKLGHFTSSCATFFAGIVIAAICCWEVTLLCLVVVPLILIIGAIYTKKMNSISTSKMLFHSEATSMIEQTISQIKTVYAFAGESSAIKSFTENMDKQYIISKGEALVKGVGTGTLQTVTFCSWALIVWVGAVVVRAGRATGGDIIAAVMSILFGAISLSYAAPDMQIFNQAKAAGYEVFQVIQRKPLISNESEGKMPDKIKGDIDFHDVHFSYPSRPDKPILHGLSLSIPAGKTVALVGSSGCGKSTVISLVSRFYDPSRGAIFIDHHNIKDLNLKFLRRNIGAVSQEPSLFAGTINDNLKVGKMDADDQEIKKAAVMSNAHSFISQLPNQYLTEVGERGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDSESENLVQEALETATQGRTVILIAHRLSTVVNADMIAVVENGQVAETGTHQSLLDTSRFYSTLFSMQNLEPVPDSRATISKNKSARQEDFPIETRPPVEVQGEVQRNITEYSVLKEQNKMSSEKRNIFFRIWFGFKKRDLVKISIGSFAAAFSGISKPFFGFFIITIGVAYFKEDAKTKVGLYSAIFTAVGMLSLFSHTFQHYFFGVVGEKAMANLRHALYSGLLRNEVGWFDKSENTVGSLTSRIITDTAMVKVIIADRMSVILQCVSSILIATVVSMAVNWRMSLVAWSVMPCHFIGGLIQAKSAKGFSGDYSAAHSELVALASESTTNIRTIASFCHEEQVMRKAKISLEIPKKKYRKESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQASFENGIRSYQIFSLTVPSITELYTLIPTVISAINILTPAFKTLDRKTQIEPDTPDDSQPEKIQGNVEFENVKFNYPSRPEVTVLDNFSLQIEAGLKVAFVGPSGAGKSSVLALLLRFYDPQGGKVLIDGKDIRKYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGNNGTSESEIVEVAKEANIHEFVSNLPNGYSTVVGEKGCQLSGGQKQRIAIARTILKKPAILLLDEATSALDAESEGIIVNALNAIHMKEDSGLRSRTTQITVAHRLSTVINSDTIIAMDKGKVVQMGSHSTLVAAESGLYSRIFRLQSFNETS* 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01251 1249 Gene3D - 354 602 IPR027417 -
Lapu9g01251 1249 Pfam ABC transporter transmembrane region 679 941 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu9g01251 1249 Pfam ABC transporter transmembrane region 43 315 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu9g01251 1249 ProSitePatterns ABC transporters family signature. 1136 1150 IPR017871 GO:0005524|GO:0016887
Lapu9g01251 1249 CDD ABC_MTABC3_MDL1_MDL2 364 601 - -
Lapu9g01251 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 997 1241 IPR003439 GO:0005524
Lapu9g01251 1249 Gene3D - 987 1248 IPR027417 -
Lapu9g01251 1249 CDD ABC_6TM_Pgp_ABCB1_D1_like 41 338 - -
Lapu9g01251 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 601 IPR027417 -
Lapu9g01251 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 989 1243 IPR027417 -
Lapu9g01251 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 43 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu9g01251 1249 PANTHER ABC TRANSPORTER B FAMILY 14 600 IPR039421 -
Lapu9g01251 1249 SUPERFAMILY ABC transporter transmembrane region 666 985 IPR036640 GO:0005524|GO:0016020
Lapu9g01251 1249 Pfam ABC transporter 1015 1164 IPR003439 GO:0005524
Lapu9g01251 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Lapu9g01251 1249 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524|GO:0016887
Lapu9g01251 1249 FunFam ABC transporter B family member 4 354 608 - -
Lapu9g01251 1249 CDD ABC_MTABC3_MDL1_MDL2 997 1243 - -
Lapu9g01251 1249 SUPERFAMILY ABC transporter transmembrane region 22 351 IPR036640 GO:0005524|GO:0016020
Lapu9g01251 1249 Pfam ABC transporter 382 531 IPR003439 GO:0005524
Lapu9g01251 1249 FunFam ABC transporter B family member 1 987 1244 - -
Lapu9g01251 1249 CDD ABC_6TM_Pgp_ABCB1_D2_like 671 980 - -
Lapu9g01251 1249 SMART AAA_5 1024 1218 IPR003593 GO:0016887
Lapu9g01251 1249 SMART AAA_5 391 583 IPR003593 GO:0016887
Lapu9g01251 1249 Gene3D ABC transporter type 1, transmembrane domain 28 618 IPR036640 GO:0005524|GO:0016020
Lapu9g01251 1249 Gene3D ABC transporter type 1, transmembrane domain 640 985 IPR036640 GO:0005524|GO:0016020
Lapu9g01251 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 679 962 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01251 Lapu-Chr9 26484923 26493998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01251 12 1248 Calmodulin-binding Proteins AT2G36910 41.042 0.0 965
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01251 K05658 - zju:107414909 1781.15