Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01249 ATGGAGACTCTGAAAGCAGCTATTCCAGAAAGCCTGAAGCGAGCGATAGGGGATAGCAGTGTCGATGATCTTGGAAGCACGTGCTCTTCTCTTCACCGCTTCTTTCTTCACTTCGACCCATTTCACGAGATTATCACTCAACTGGCGGATCCCAAGTATGCTCTGTGCGGTAAGAGTAAGGAAGATGCCTTGAAATCCAAGCAGCTTGGTAATCAATGCTTCTCCAACGCAGATTATGCCAAGGCCTTGGACTGCTACACTCAGGCATTGCGCAAGGCTCCACTAGATACTGGTGATATGAAAAGTAATCTTGTTGCAACATTATATATCAATCGTGCTACTGTATTGCATAAAATGAGTCTTTTAGTAGAATGCTTGCGAGATTGCACTCGAGCTCTTCAAATTTGCCCAAGCTATGCAAAGGCATGGTACAGGAGAGGTAAGGCAAATGCTTCATTGGAAAATTATAGAAATGCTATTTGCGACCTCAATGTGGCCAAGAGTGTGGAACCTTCAATGGGTGGGAAGAGACAAATAGAAGGTGAACTGAAAATTCTTTTAGACCAATGCAAAAGCACAAATGCGGTAGTACAGATGCAACATAAGGAGAACAGCTGCAATACTGCGGGTGAGATGCCTCAAATGAAGCTACAGTGTGTCTCCATGCCTGATAAAGGAAGAGGCATGGTGTCATCGTGTGTCATTTCACCAGGTTCTTTGATTCATTCCGAACAACCTTATGCCATGATAATATTAAAGCAATGTCGGGAAACCCATTGCCATTATTGCTTGAATGATCTACCTGCTGATAGAGTTCCATGTATATCATGTTCAATACCATTGTATTGCTCCCACCAATGCCAGATACGAGCTGGTGGGCAAATGTTCAAGATTTATCCAGAAAAAAATGACACTTTTAAAAATATGCCCAGTGATCTTGGAGAATATGCTTCTGAAGTTATCCAAAACAATGATTCTGAAGAAGAAATTGAGGATATTACTGAACATAAACATGAGTGCCGAGGTGTACATTGGCCTGTGGTACTCCCATCTGAGATAGTTTTGGCTGGCCGAATACTAGCAAGGTTTTTGCTGAATAGCACATCTGAAAATATTATAAACTTTGTGGAAGGGCTGGAGCTTTCTCATTGTTACAACCATATGTCATCTGAAAGCAAATTGGATTCACATATATATGCCATTGTATTGTTATATTGTCTTCAACACTCTTGTGGAACTATGTTTTCTATAGACGGAGTCTCTGTATCACAGGTTGTCATAATTATTTCTCAAATTAAAGTGAATTGTATGACTGTTGTTCGGTTAAAATCAGTAGACGCTCATGGACTATCAGATCATCTTGGAGAATTTCCATTTCAATCTGGTGCACATTCAACTAGTAATGTGGAACAGGTGAGAGTGGGTAAAGCTATTTATAAAGCTGCCAGTTTATTTAACCATTCTTGCCAACCGAATGTTCATGCATATTTTCTTTCACGCACACTTTATCTACGAACCACGCATGGTGTAGCAGCTGGTTGTCAGTTAGAATTGTCTTATGGTCCACAGGTTGGGTTTTGGGATTGTAAAGATCGCCTTAACTTCCTCAAAGATGAATATGCTTTTCATTGTCGATGTATTGGTTGTTCAGAAGTTAATGTATCTGATGTTGTCCTCAATGCCTTCCATTGTGTCAATCCAAATTGTTCTGGCGCAGTGTTAGAAAGCAGAGTACTTGATTGTGAACAGCAGAAGATAAAGCACTTCACTCTTACTGACTGTGTTCGCAAGAGTGATGACATTTTTGAAGTATGTCTTAACGTCTTCAAACAAAATGGGGCCTACAGTCAACCTGGATACTGTTTGAAATGTGGTTCTTACTGTGATTTGGAGTCTTCACATGCTGCAGTCAGTGAAGCTTTAATATGCATAAAAAGGTTGCAGGATGCAATATTGTTGAAAGAAATTTCAAGTATTACCATTTCTGATGCTTTGATGTCTCTTCAATCGTTAAGATTAAACTTGCATGCATACAACAAGCTTATTGCAGAGGCAGAAGACAGCATTGCTCAGGCTTTTTGTTTAGTGGGCGAATTACAATTATCTGTTTATCACTGCAAAGCTTCTATACAGATTCTGGAAAAGCTATACGATACTGATGATATTGTTATTGCTTATGAACTTGTGAAGCTTTCTTCCATCCAACTTTCCTTGGGTGATTCTACTGCTGTGGAAAGCATAAATCGAATAGATGATATCTTCTCACGTTATTATGGACTTCATGCAGACTTGGTGTTCCCTTATCTTCAATATATTAGGAGAGAAATTGAGAAATTTTCAGTGAAGGCCATCCAATAA 2358 0.3961 METLKAAIPESLKRAIGDSSVDDLGSTCSSLHRFFLHFDPFHEIITQLADPKYALCGKSKEDALKSKQLGNQCFSNADYAKALDCYTQALRKAPLDTGDMKSNLVATLYINRATVLHKMSLLVECLRDCTRALQICPSYAKAWYRRGKANASLENYRNAICDLNVAKSVEPSMGGKRQIEGELKILLDQCKSTNAVVQMQHKENSCNTAGEMPQMKLQCVSMPDKGRGMVSSCVISPGSLIHSEQPYAMIILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSHQCQIRAGGQMFKIYPEKNDTFKNMPSDLGEYASEVIQNNDSEEEIEDITEHKHECRGVHWPVVLPSEIVLAGRILARFLLNSTSENIINFVEGLELSHCYNHMSSESKLDSHIYAIVLLYCLQHSCGTMFSIDGVSVSQVVIIISQIKVNCMTVVRLKSVDAHGLSDHLGEFPFQSGAHSTSNVEQVRVGKAIYKAASLFNHSCQPNVHAYFLSRTLYLRTTHGVAAGCQLELSYGPQVGFWDCKDRLNFLKDEYAFHCRCIGCSEVNVSDVVLNAFHCVNPNCSGAVLESRVLDCEQQKIKHFTLTDCVRKSDDIFEVCLNVFKQNGAYSQPGYCLKCGSYCDLESSHAAVSEALICIKRLQDAILLKEISSITISDALMSLQSLRLNLHAYNKLIAEAEDSIAQAFCLVGELQLSVYHCKASIQILEKLYDTDDIVIAYELVKLSSIQLSLGDSTAVESINRIDDIFSRYYGLHADLVFPYLQYIRREIEKFSVKAIQ* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01249 785 SMART tpr_5 683 716 IPR019734 GO:0005515
Lapu9g01249 785 SMART tpr_5 63 96 IPR019734 GO:0005515
Lapu9g01249 785 SMART tpr_5 106 139 IPR019734 GO:0005515
Lapu9g01249 785 SMART tpr_5 140 173 IPR019734 GO:0005515
Lapu9g01249 785 Coils Coil 668 688 - -
Lapu9g01249 785 Gene3D Tetratricopeptide repeat domain 527 779 IPR011990 GO:0005515
Lapu9g01249 785 Gene3D SET domain 435 520 IPR046341 -
Lapu9g01249 785 Pfam SET domain 226 521 IPR001214 GO:0005515
Lapu9g01249 785 Gene3D Tetratricopeptide repeat domain 41 203 IPR011990 GO:0005515
Lapu9g01249 785 SUPERFAMILY TPR-like 59 191 IPR011990 GO:0005515
Lapu9g01249 785 ProSiteProfiles SET domain profile. 215 521 IPR001214 GO:0005515
Lapu9g01249 785 SUPERFAMILY SET domain 219 546 IPR046341 -
Lapu9g01249 785 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 779 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lapu9g01249 SET 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01249 K24634 - gmx:100783548 1381.31