Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01224 ATGCGAGTGTTATTTTCAAACATGAGAGGTTTTCTTTTTCTCGTGTGGTTGTTGGAGGTGGTTTGTGTGGCGGTGACGGCGGTGAGTCCCTCTCTGAACGACGACGTTTTGGGGCTGATTGTGTTCAAGGCTGACATACGAGATCCGAAGGGGAAGCTTGCGTCTTGGAGCGAGGACGATGAGAGTGCGTGCGGGGGTGGCTGGGTTGGGGTGAAGTGCAACCCTAGATCCAACAGAGTGGTAGAGGTTAACCTTGATGGGTTTTCTCTCTCTGGGAAAATAGGTCGAGGGTTGCAAAGGTTGCAGTTTCTAAGGAAGCTTTCTCTGGCGAACAACAACCTCACTGGGGGGATAAACCCCAACATTGCTCGAATAGATAGCCTTAGGGTCATTGACTTGAGTGGTAATAGTCTCTCAGGGGAGGTGTCTGATGATGTTTTCCGACAATGTGGGTCTCTCAGGGCTGTTTCCTTGGCCAGGAACAGGTTTTCTGGGTCCATTCCCTCTACTTTGGGGGCGTGTTCTGCTCTTGCTGCTATCGACCTTTCTAATAACCAGTTTTCTGGGTCCGTCCCCTCCGGGGTTTGGTCTTTGAGTGCTCTTAGGTCCCTGGATTTGTCGGATAACTTGTTGGAGGGAGAGATTCCTAAGGGGGTTGAGGCCATGAAGAATTTAAGGAGTGTTAGCTTGGCGAGGAACCGGTTGACTGGGAATGTTCCTGGTGGGTTTGGGAGCTGTTCGCTTTTGAGGTCCATTGACCTGGGGGATAATTCATTTTCTGGTAGTATCCCTGGTGATTTCAAGGAACTTGCATTGTGTGGTTACCTTAGTTTGCGAGGGAATGTTTTTTCTGGAGAGCTTCCTGAGTGGATCGGGGAGATGAGAGGTCTTGAGACGTTGGACCTTTCAAACAATGGGCTTACTGGTCAGGTGCCAAACTCTGTTGGAAATCTTCAGTCATTGAAGATGTTGAATTTTTCTGGGAATGGTTTCACTGGTAGTCTGCCTGAGTCTATGTCTAATTGCACGAAACTTCTGGTGTTGGATGTCAGCCGAAATTCAATGTCCGGGGGGCTTCCATTGTGGATTTTCAAGTCAGATTTGGACAAGGTTTTGTCGTCGGAAAATGGAGCAAGTGCTAGCAAGAAAAGCCCTTTGATTTCCTTGGCTGAAGTTGCAGTTCAAAGTCTTCAGGTTTTGGATTTGTCTCACAATGCATTTTCTGGTGAAATCACATCTGCTATTGGAGGTTTAAGCAGCTTGCATGTTTTGAATTTAGCAAATAATTCTCTCATAGGTCCTATACCAGCTGCAATTGGAAAGTTGAAAACATGTTCTAGTCTTGATTTGAGCTATAATAAGCTAAATGGAAGTATACCTTGGCAAATAGGAGGAGCTGTGTCCTTGAAAGAGCTGGTGCTGAAAAAGAACTTCCTAATTGGGAAAATTGCAACGTCAATTGAGAACTGTTCTTTGCTAAGCACTCTGATCCTGTCTCAGAACTGGCTGAGTGGCCCTATACCTGCAGCAGTTGCAAAACTTACCAACCTGCAAACTGTGGACTTATCTTATAACAACCTTACTGGAAACCTTCCCAAGCAACTGGCCAACCTTCCCAATCTTCTTTCCTTCAATTTATCTCACAACAACCTTCAGGGTGAACTGCCGGCTGGTGCTTTTTTCAACACCATTTCGCCTACCTCTGTTTCTGGCAATCCATTACTTTGTGGCGCTGCAGTAAACAAATCATGCCCTGCTGTCCTCCCAAAGCCTATTGTACTAAATCCCAACACTTCTACTGACGCTAGCCCAGGTGCATTGCCTCAAAATTCAGGTCACAAAAGAACCAGCATTCTCAGCATTTCGACACTCGTTGCAATTGGTGCAGCTGCTGTCATTGTAATTGGTGTCATTAGCATCACTGTTCTCAATCTCCGCGTTCGATCCTCCACATCTCGAGATGCAGCTGCCCTCACATTTTCTGCAGGAGATGAATTCAGCCGTTCCCCTACTACAGATGCCAACTCTGGCAAGCTTGTCATGTTTTCTGGTGAGCCTGATTTCAGTTCTGGTGCCCATGCTTTGCTTAATAAAGACTGTGAGCTTGGGCGTGGAGGATTTGGTGCAGTGTACCAAACGGTTCTTAGAGATGGGCATTCAGTTGCAATAAAGAAGCTCACTGTATCAAGCCTTGTCAAGTCTCAAGAAGATTTTGAAAGAGAAGTGAAAAAGTTGGGAAAAATCAGACACCAAAACCTTGTGGAGCTTGAGGGTTATTATTGGACTCCATCACTTCAGCTTCTCATATATGAGTATGTCTCCGGTGGTAGTCTGTATAAGCATCTCCATGAAGGATCTGGTGGAAACTTCCTCTCATGGAATGAGAGATTTAATGTGATTCTCGGAACCGCCAAGGCCTTGGCACACTTGCACCATTCCAGCATTATTCACTATAACATCAAGTCAACCAATGTCCTTCTTGACAGTTATGGTGAACCGAAGATAGGGGACTTTGGCCTAGCGAGGCTGTTACCAATGCTTGACCGATATGTCTTGAGCAGCAAAATTCAGAGTGCACTCGGCTACATGGCCCCGGAGTTTGCCTGCAAAACAGTGAAAATCACTGAGAAATGTGATGTATACGGGTTCGGTATCCTGGTTTTGGAGATCGTGACAGGGAAGAGGCCGGTTGAATACATGGAAGATGATGTGGTGGTACTTTGTGACATGGTGAGAGGGGCTCTGGAAGAAGGTAGGGTGGAGGAATGCATTGATGAGAGGCTCCAAGGGAAGTTCCCAGCAGAAGAAGCCATTCCTGTAATGAAGCTAGGCTTAATATGTACTTCTCAAGTGCCATCTAACAGGCCCGACATGGGAGAGGTAGTTAACATATTGGAGCTGATAAGATGTCCCTCTGAAGGACAAGAAGAATTGGGATGA 2940 0.4633 MRVLFSNMRGFLFLVWLLEVVCVAVTAVSPSLNDDVLGLIVFKADIRDPKGKLASWSEDDESACGGGWVGVKCNPRSNRVVEVNLDGFSLSGKIGRGLQRLQFLRKLSLANNNLTGGINPNIARIDSLRVIDLSGNSLSGEVSDDVFRQCGSLRAVSLARNRFSGSIPSTLGACSALAAIDLSNNQFSGSVPSGVWSLSALRSLDLSDNLLEGEIPKGVEAMKNLRSVSLARNRLTGNVPGGFGSCSLLRSIDLGDNSFSGSIPGDFKELALCGYLSLRGNVFSGELPEWIGEMRGLETLDLSNNGLTGQVPNSVGNLQSLKMLNFSGNGFTGSLPESMSNCTKLLVLDVSRNSMSGGLPLWIFKSDLDKVLSSENGASASKKSPLISLAEVAVQSLQVLDLSHNAFSGEITSAIGGLSSLHVLNLANNSLIGPIPAAIGKLKTCSSLDLSYNKLNGSIPWQIGGAVSLKELVLKKNFLIGKIATSIENCSLLSTLILSQNWLSGPIPAAVAKLTNLQTVDLSYNNLTGNLPKQLANLPNLLSFNLSHNNLQGELPAGAFFNTISPTSVSGNPLLCGAAVNKSCPAVLPKPIVLNPNTSTDASPGALPQNSGHKRTSILSISTLVAIGAAAVIVIGVISITVLNLRVRSSTSRDAAALTFSAGDEFSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLRDGHSVAIKKLTVSSLVKSQEDFEREVKKLGKIRHQNLVELEGYYWTPSLQLLIYEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHHSSIIHYNIKSTNVLLDSYGEPKIGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGILVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECIDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELG* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01224 979 Pfam Leucine rich repeat N-terminal domain 33 74 IPR013210 -
Lapu9g01224 979 Gene3D Ribonuclease Inhibitor 193 288 IPR032675 -
Lapu9g01224 979 Gene3D Ribonuclease Inhibitor 33 192 IPR032675 -
Lapu9g01224 979 Pfam Protein tyrosine and serine/threonine kinase 698 964 IPR001245 GO:0004672|GO:0006468
Lapu9g01224 979 Gene3D Ribonuclease Inhibitor 395 587 IPR032675 -
Lapu9g01224 979 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 304 966 - -
Lapu9g01224 979 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 690 772 - -
Lapu9g01224 979 CDD STKc_IRAK 702 968 - -
Lapu9g01224 979 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 314 588 - -
Lapu9g01224 979 PRINTS Leucine-rich repeat signature 297 310 - -
Lapu9g01224 979 PRINTS Leucine-rich repeat signature 514 527 - -
Lapu9g01224 979 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 773 974 - -
Lapu9g01224 979 SMART LRR_typ_2 418 442 IPR003591 -
Lapu9g01224 979 SMART LRR_typ_2 318 342 IPR003591 -
Lapu9g01224 979 SMART LRR_typ_2 514 537 IPR003591 -
Lapu9g01224 979 SMART LRR_typ_2 222 245 IPR003591 -
Lapu9g01224 979 SMART LRR_typ_2 198 221 IPR003591 -
Lapu9g01224 979 SMART LRR_typ_2 294 317 IPR003591 -
Lapu9g01224 979 SMART LRR_typ_2 538 562 IPR003591 -
Lapu9g01224 979 SMART LRR_typ_2 394 417 IPR003591 -
Lapu9g01224 979 SMART LRR_typ_2 125 149 IPR003591 -
Lapu9g01224 979 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 33 313 - -
Lapu9g01224 979 SUPERFAMILY L domain-like 60 361 - -
Lapu9g01224 979 SUPERFAMILY L domain-like 271 593 - -
Lapu9g01224 979 Pfam Leucine rich repeat 295 354 IPR001611 GO:0005515
Lapu9g01224 979 Pfam Leucine rich repeat 224 281 IPR001611 GO:0005515
Lapu9g01224 979 Pfam Leucine rich repeat 152 211 IPR001611 GO:0005515
Lapu9g01224 979 Pfam Leucine rich repeat 396 455 IPR001611 GO:0005515
Lapu9g01224 979 Pfam Leucine Rich repeat 514 529 IPR001611 GO:0005515
Lapu9g01224 979 ProSitePatterns Protein kinases ATP-binding region signature. 702 725 IPR017441 GO:0005524
Lapu9g01224 979 Gene3D Transferase(Phosphotransferase) domain 1 773 977 - -
Lapu9g01224 979 Gene3D Ribonuclease Inhibitor 289 389 IPR032675 -
Lapu9g01224 979 ProSiteProfiles Protein kinase domain profile. 696 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g01224 979 Gene3D Phosphorylase Kinase; domain 1 690 772 - -
Lapu9g01224 979 SUPERFAMILY Protein kinase-like (PK-like) 700 963 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01224 Lapu-Chr9 26142934 26147903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01224 9 979 Receptor kinase-like Gene Family AT3G56370 66.256 0.0 1275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Lapu9g01224 PK_Tyr_Ser-Thr 4.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01224 - - gmx:100791629 1749.95