Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01221 ATGTCCTCCAAAGACATCACCCTCGTCCCCGACCAGAGGATCGAAAACGGTCTTAGCTCCCCTCTCGTCTTCCAAGACGACTCTCTCCGCTTCAATTGCCCCACCCCGCAGCGTCGGGTCGGGGACCCGGGTCCCAAAACCCGCGAACTCGGTGCCTTCATCGATGAGAAGATGTTCATTGACCGTGACCGCTTCTTCGCCTCTCCGAATCCCGACTTCCGCCGCTACGCCGACTGCTCTTCCCGTCAAGACCCCCGCAATTGGACCGTCAACGGCACCGCCGCCACTCCCAGCCAGGAAGACGATTCCGACGAGGACGAAGAAGATGATGACGACGACGATGACGACGAAGGCGATACCGAAGTCGAAGGACTCGTTGGTGATGGAAGCAAAAGCGAAATTATCACTAACAACAACGGTAGCGGTGGTAATTTGCCTTCTGTTGCAAACGGGAAAGCTCACTCTTTTGTTTCCGGGAGAGAGCTGTTGGGGAAGGATGGTGGAGAGATTGGGCAGTTGGTACTTAGCAACGTGAGTGGTGGTGGTGATGAAGATCATCGGCAAGATGGGTTAGGTAAGTCTCAGAATTCTGTTACTGTTGCCGAAACTGACTGTGAGGAGTATTATTCGCACTATCTTCAAGGAGCTGATGGGGCTTCTGGCCACAAAATGATGGTGGATGATGGTAGTTGTGGGTTTAGTGGGAGAAAGGATGCTATGTATTCCACCGAGTCAGGGGAATCACTCAGGAATATTCTTTCAGATCCCGTTACCGGAGCTCTTATGGATGATGCGATGATATTACCATGTGGACATTCATTTAGCGGAAGTGGAATACAGCATGTTATTAGAATGAAAGCTTGCTGCACTTGTTCTCAACCCACAACCGAAGAATCAATATCTCCTAACCTATCACTTCGAGCTGCTGTACAGGCATATCGTCGGGAAGAGGAGTCTCAATTTTACCGGTCACCTAAAAGAAGAAGAGAGAGATTTGATCAGGGTGGATTTGGAGATTTATCTGCTATGGAACCATCAAGGAGTAGAGGTGTTCAGTTTCCATTTGCTGTTATGGACCGGGTTGTCATAAAGGGAAACAAAAGGACACCACAACGCTTTGTTGGGCGTGAAGCTATTGTAACAACGCAATGTCTGAATGGATGGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAGTTGCAGTATCGATCTCTTGCTAAGGTTTCGGATGATCCTTAA 1245 0.4932 MSSKDITLVPDQRIENGLSSPLVFQDDSLRFNCPTPQRRVGDPGPKTRELGAFIDEKMFIDRDRFFASPNPDFRRYADCSSRQDPRNWTVNGTAATPSQEDDSDEDEEDDDDDDDDEGDTEVEGLVGDGSKSEIITNNNGSGGNLPSVANGKAHSFVSGRELLGKDGGEIGQLVLSNVSGGGDEDHRQDGLGKSQNSVTVAETDCEEYYSHYLQGADGASGHKMMVDDGSCGFSGRKDAMYSTESGESLRNILSDPVTGALMDDAMILPCGHSFSGSGIQHVIRMKACCTCSQPTTEESISPNLSLRAAVQAYRREEESQFYRSPKRRRERFDQGGFGDLSAMEPSRSRGVQFPFAVMDRVVIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDP* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01221 414 ProSiteProfiles U-box domain profile. 248 320 IPR003613 GO:0004842|GO:0016567
Lapu9g01221 414 SUPERFAMILY RING/U-box 248 320 - -
Lapu9g01221 414 MobiDBLite consensus disorder prediction 131 148 - -
Lapu9g01221 414 Pfam U-box domain 253 318 IPR003613 GO:0004842|GO:0016567
Lapu9g01221 414 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 5 413 - -
Lapu9g01221 414 MobiDBLite consensus disorder prediction 99 123 - -
Lapu9g01221 414 MobiDBLite consensus disorder prediction 71 148 - -
Lapu9g01221 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 318 IPR013083 -
Lapu9g01221 414 MobiDBLite consensus disorder prediction 82 98 - -
Lapu9g01221 414 MobiDBLite consensus disorder prediction 174 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01221 Lapu-Chr9 26024164 26028977 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01221 181 414 Plant U-box Gene Family AT5G05230 57.261 1.23e-82 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01221 - - gmx:100786717 676.011