Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01174 ATGGGATGCGTTTGTGGCAAGTTTTCTCCCCCTCCAGAAGCTGAGAGGCGGCAACGGTCAGTGAAGAGAGTTGTGAGCCACAAGGGTTCCAGGCCACGCTCCTCTAATGTGGGAGAGAGGGTGAAAAGGGAGACTCAGAGAAAGAGAGTGAGTGTGAGTGTTAATAAGGATTCAGGTGGAGGTGCTGCTGGAGGAGGAGGAGGAGAAAAGGAAAAAGCAGTTGCTAAAAAAGAGAAGAATAAGGTATGGGAGGATGGTGCTAAAGAAAGTAAGAGTAGTAAAGATTGGGATTCTAAGGAGGCCAAATATGAATCTGTGGATGGGTGGCCAAAGTGGTTACTGGATAACATCCCCACCACTGTTCTGGCTAAGCTTGTTCCCAAGAGCGCTGATTCCTATGAAAAACTTGCCAAGATAGGACGTGGAACATATAGCAATGTGTACAAAGCAAGAGAGAAGGGCACGGGAAAGATTGTTGCTTTGAAGAAGGTACGGTTTGACACGTCTGATTCTGAAAGCATAAAGTTCATGGCTAGAGAGATCATGATGCTGCAGAAGCTAGATCATCCCAATGTCATCAAGCTTAAAGGACTAGCAACATCGAGGATGCAGTATAGCCTTTATCTAGTTTTTGACTTCATGCAGTCTGATCTCACCCGCATTATCTCTCGACCCGGGGAGACACTCACCGAACCACAGATCAAGTGCTATATGCAGCAGCTACTTCGTGGTCTCCAACACTGTCACGAGAGGGGAATTATGCACCGAGATATTAAGGCTTCTAACTTGTTAATAGACAGAAGAGGGGTGCTGAAAATTGCAGATTTTGGGCTTGCAACTTCCATTGAATCTGAAAAACCACTGACGAATAGAGTGGTAACACTTTGGTATAGAGCTCCAGAACTTCTTTTGGGTTCAACAGATTATGGATATAGCATTGATCTCTGGAGTGCAGGGTGCCTCTTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCTGGAAGGACAGAGGTTGAACAGATTCACATGATCTTCAAACTTTGTGGTTCTCCTTCAGAGGATTACTTTAAAAAACTGAAGCTATCAACAAGCTACAGGCCTCCACAGCATTACAAACCTTCTTACCAAGACAACTTCCACAAGTTTCCTTCCTCTTCCCAGCCACTCTTGGCTACACTTCTTGATCTCAACCCTACAAATCGTGGCACTGCTGTCTCTGCCCTTCAAAGTGAATTCTTCCAATGCAGTCCATTAGCATGTGACCCTTCAGCTTTGCCAGTAATCCACAAAGAAGAGGATGAACGCTTACAAACTAAGAGAGGCAAAAGGCACAGGGTTTCGAAAAGAGGGCAACCATCTCAAACAAGTAAAAGTGAAGCTATTCAATCAGGAAAAACTCAAATTGCTGAACAACCCCGTGAAGATACAGAATCGTCAAAAGAGAAGAATGTGGAACAACAGAAGCAGGGTCAAGAAACTGGGCATAGTGCTAGCAGCACATCATCTGGCTCAAGACACTTCATGAATGAAGGGAGCACAAATGCATCTTTATCCCCAGCTTTTCTCTCTAGTGGCAGTGTGAGAAAATCTCCTAAAACAGAGGGTCACCCTAATGCTCTTAAGAACATCAAACACTATAGTGCTCTCTTACAGGCATCTATGATTGATATGATCAACCGCAATGAAGCCAACGAAGTTCCTCAGCTTCGAAAATCCTTCTCTGCGTTGGATTTTCGACTTGGTCCAGACAAGCTATCAAACCTATATGCCTTACCTAATAAACAGATTTAA 1791 0.4433 MGCVCGKFSPPPEAERRQRSVKRVVSHKGSRPRSSNVGERVKRETQRKRVSVSVNKDSGGGAAGGGGGEKEKAVAKKEKNKVWEDGAKESKSSKDWDSKEAKYESVDGWPKWLLDNIPTTVLAKLVPKSADSYEKLAKIGRGTYSNVYKAREKGTGKIVALKKVRFDTSDSESIKFMAREIMMLQKLDHPNVIKLKGLATSRMQYSLYLVFDFMQSDLTRIISRPGETLTEPQIKCYMQQLLRGLQHCHERGIMHRDIKASNLLIDRRGVLKIADFGLATSIESEKPLTNRVVTLWYRAPELLLGSTDYGYSIDLWSAGCLLAEMFVGRPIMPGRTEVEQIHMIFKLCGSPSEDYFKKLKLSTSYRPPQHYKPSYQDNFHKFPSSSQPLLATLLDLNPTNRGTAVSALQSEFFQCSPLACDPSALPVIHKEEDERLQTKRGKRHRVSKRGQPSQTSKSEAIQSGKTQIAEQPREDTESSKEKNVEQQKQGQETGHSASSTSSGSRHFMNEGSTNASLSPAFLSSGSVRKSPKTEGHPNALKNIKHYSALLQASMIDMINRNEANEVPQLRKSFSALDFRLGPDKLSNLYALPNKQI* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01174 596 MobiDBLite consensus disorder prediction 470 488 - -
Lapu9g01174 596 CDD STKc_CDK9_like 133 413 - -
Lapu9g01174 596 FunFam Putative serine/threonine-protein kinase 216 451 - -
Lapu9g01174 596 Pfam Protein kinase domain 133 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g01174 596 MobiDBLite consensus disorder prediction 451 469 - -
Lapu9g01174 596 ProSiteProfiles Protein kinase domain profile. 133 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g01174 596 PANTHER CELL DIVISION PROTEIN KINASE 131 419 - -
Lapu9g01174 596 SUPERFAMILY Protein kinase-like (PK-like) 128 416 IPR011009 -
Lapu9g01174 596 Gene3D Transferase(Phosphotransferase) domain 1 216 451 - -
Lapu9g01174 596 MobiDBLite consensus disorder prediction 1 99 - -
Lapu9g01174 596 MobiDBLite consensus disorder prediction 70 99 - -
Lapu9g01174 596 MobiDBLite consensus disorder prediction 33 51 - -
Lapu9g01174 596 FunFam probable serine/threonine-protein kinase At1g54610 120 215 - -
Lapu9g01174 596 MobiDBLite consensus disorder prediction 489 531 - -
Lapu9g01174 596 Gene3D Phosphorylase Kinase; domain 1 122 215 - -
Lapu9g01174 596 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
Lapu9g01174 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Lapu9g01174 596 SMART serkin_6 133 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g01174 596 MobiDBLite consensus disorder prediction 432 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01174 Lapu-Chr9 25353167 25358534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01174 128 537 Core Cell Cycle Gene Families AT5G10270 40.233 7.00e-96 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lapu9g01174 Pkinase 3.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01174 K08819 - gmx:100782603 882.093