Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01170 ATGTCGGCTATAGTCTCAGCTTTGACTCACGTTGTCACCGGAGAGGTTCCAACAACCACTGATTCTGCGTTTCTTTATGATCATCATCATCATGATGCTGTTACACCACACATGCCTTCTTCTGCTTCTACAACACTACCCTCTTTACCTTCTTCTTCTAATTATGCTCTTGCCACCTCTTCTCACAAGAGAACTAGGCAACAAGACGCACCATGCTTCTCGCACGCCTCTTCTATACCAAGAAGTGGAGAATGTTCAAACAATTCGACAAGCAGAATAACAAGGGAAATGGGAAATGCTGTGTATGAATACAAAACAACAGAGAATGAGAGGAGGGATGAGGGGAGGAGGAAATACAGAGGAGTGAGGCAGAGGCCCTGGGGGAAATGGGCGGCGGAGATAAGGGATCCGTTCAAGGCGGCGAGGGTGTGGTTGGGAACGTTTGACACGGCGGAGGCAGCCGCTAGAGCATACGATGAAGCTGCTCTTCGATTTAGAGGAAACAAGGCGAAACTCAACTTCCCGGAGAATGTCACTCTCCGACAACCTCAGTTTAGTGTTTCAAATTCTCACACTTCTCTTGTGTCCATTTCAACGTCTGCGGATCCAGTTGTGCATACTCGACCTTTTCTCACTTCTGAGGCTGCAACCAACGTTTACGAGTATTTTCAGCTCTCGGGCTACCCCACCAACCTTTATGATGATAGGATTCTTGTTACGTCTTCCATGGCTTCTCATCTTCAATCTTCTTCCTCCTCCTCTTCTTCTGCGTTTGTAACTTCTTCGCAAGACACTTCACTTTCTTCCTTTTATTCTGGCCAGATGCCACCTTGGTCAGCTTCTGCTCCTAGTTCTTCCTCCTCCGGATGA 870 0.4747 MSAIVSALTHVVTGEVPTTTDSAFLYDHHHHDAVTPHMPSSASTTLPSLPSSSNYALATSSHKRTRQQDAPCFSHASSIPRSGECSNNSTSRITREMGNAVYEYKTTENERRDEGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVTLRQPQFSVSNSHTSLVSISTSADPVVHTRPFLTSEAATNVYEYFQLSGYPTNLYDDRILVTSSMASHLQSSSSSSSSAFVTSSQDTSLSSFYSGQMPPWSASAPSSSSSG* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01170 289 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Lapu9g01170 289 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Lapu9g01170 289 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Lapu9g01170 289 PANTHER DNA-BINDING DOMAIN 69 262 IPR044808 GO:0003700|GO:0009873
Lapu9g01170 289 MobiDBLite consensus disorder prediction 37 90 - -
Lapu9g01170 289 FunFam Ethylene-responsive transcription factor 2 117 176 - -
Lapu9g01170 289 CDD AP2 118 177 IPR001471 GO:0003700|GO:0006355
Lapu9g01170 289 Gene3D AP2/ERF domain 117 177 IPR036955 GO:0003700|GO:0006355
Lapu9g01170 289 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Lapu9g01170 289 MobiDBLite consensus disorder prediction 267 289 - -
Lapu9g01170 289 MobiDBLite consensus disorder prediction 35 90 - -
Lapu9g01170 289 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Lapu9g01170 289 SUPERFAMILY DNA-binding domain 118 176 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01170 Lapu-Chr9 25281529 25282668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01170 107 180 AP2-EREBP Transcription Factor Family AT5G61890 77.027 3.18e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu9g01170 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01170 - - pvu:PHAVU_009G137900g 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01170 9 25281529 25282668 Lapu9g01170 9 25281529 25282668 ECH
Lapu3g03396 3 57201802 57203154 Lapu9g01170 9 25281529 25282668 ECH