Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01167 ATGGACTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAACAAGAGGACCGCGATTCCAGCCGGAAGAAGAAAGAGACAGAAAGGAGCTACCGGAAGCGCGAGGAGATCGACGACGGCTCCGAGGAGAGGAAGAGCAAGAGGTCAAGGGGCGACGACGAGAATGGCTCGAAGAAGGATAAAGATCGCGAAGAGCGCGACAGGGAGCGCCACAGAAGTAGCAGGGATAGAGATAGAGATAGAGACAGAGATGGTGAGAGAAGTAGTAGGGACAGAGACAGAGATAGGGAGAAGGAAAGAGATAAGGAGAGGGATCGGAGGGACAGAGACAAAGAGAGGGAGAAGAGGGAGAAGGAGAGGGACAAAGATAGGGAAAGAGAAAGAGATAGAGATAAAGACCGAAGGGACAAAGAACGCGAAGAGAGAGAGAGGTCTCGCAGGAGCAGGAGTCGTTCTGAGCGAGATAGAGAAAGAGAACGGGATTTCGACACCAGAGATAGCAGGAGATTTAGGGACAAGAAAGAGGCAGCGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGGACTGTTTTTGCATACCAGATGCCCTTAAAGGCGTCAGAGAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTAAGGGATGTCCGTCTAATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTACATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTAGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATACTACTAGTGGAGCTGCTGGGGTAGTAGGACCATATGGAGCTGTAGACAGGAAACTGTATGTGGGGAACCTTCACTTCAACATGACAGAGTCTCAATTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTGCAACTGCCGCTTGACTTGGAGACAGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCTCATCTTGAGCATTCCAAAGCTGCTCAGAGTTTAAATGGGAAACTGGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCGTTGAATGCCCAATCAAGAGCATTGCTTATGCAGAAACTGGACCGGTCTGGCATTGCAGCAAGCATTGGTCTTCCCGTTGTGAATGGGTCAGCTCCGGCTCAACAGGCTATTATGCCCATTGGTAATCCAGGTGTAATACCAGCACCAGCTGTCCCAACACAAATTATGCCTACACCAGTGATTGAACCTGTGGGAAACCCCAGTGAGTGTCTACTATTGAAGAATATGTTTGATCCAAACACTGAGACAGAGCCAGATTTTGATCTAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCCAAATACGGACGGGTGAAGCATATTGATGTTGACAAAAGAAGTGCAGGGTTTGTGTATTTGCAGTTTGAAACAGTGGAAGCAGCTAGTGCTGCTCAACGTGCAATGCACACAAGGTGGTTTGCAGGCAGAATGATTTCTGCTATCTATATGCAACCTCATATATACGAAGCCAAGTTTAAAGGGGACGCATGA 1665 0.4691 MDFDEYDYLEKTVEEQEDRDSSRKKKETERSYRKREEIDDGSEERKSKRSRGDDENGSKKDKDREERDRERHRSSRDRDRDRDRDGERSSRDRDRDREKERDKERDRRDRDKEREKREKERDKDRERERDRDKDRRDKEREERERSRRSRSRSERDRERERDFDTRDSRRFRDKKEAAEPEADPERDQRTVFAYQMPLKASERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHSKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPVVNGSAPAQQAIMPIGNPGVIPAPAVPTQIMPTPVIEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIDVDKRSAGFVYLQFETVEAASAAQRAMHTRWFAGRMISAIYMQPHIYEAKFKGDA* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01167 554 CDD RRM1_RBM39_like 190 262 - -
Lapu9g01167 554 FunFam Splicing factor CC1-like 275 380 - -
Lapu9g01167 554 Coils Coil 103 129 - -
Lapu9g01167 554 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 550 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lapu9g01167 554 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 465 543 IPR000504 GO:0003723
Lapu9g01167 554 MobiDBLite consensus disorder prediction 1 189 - -
Lapu9g01167 554 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 369 IPR000504 GO:0003723
Lapu9g01167 554 CDD RRM3_RBM39_like 459 541 - -
Lapu9g01167 554 SUPERFAMILY RNA-binding domain, RBD 290 368 IPR035979 GO:0003676
Lapu9g01167 554 NCBIfam splicing factor, CC1-like family 67 550 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lapu9g01167 554 Gene3D - 118 277 IPR012677 -
Lapu9g01167 554 FunFam Splicing factor CC1-like 115 274 - -
Lapu9g01167 554 SUPERFAMILY RNA-binding domain, RBD 457 542 IPR035979 GO:0003676
Lapu9g01167 554 Gene3D - 456 553 IPR012677 -
Lapu9g01167 554 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 266 IPR000504 GO:0003723
Lapu9g01167 554 SMART rrm1_1 292 365 IPR000504 GO:0003723
Lapu9g01167 554 SMART rrm1_1 190 262 IPR000504 GO:0003723
Lapu9g01167 554 SMART rrm1_1 461 539 IPR000504 GO:0003723
Lapu9g01167 554 FunFam Splicing factor, CC1-like protein 455 554 - -
Lapu9g01167 554 SUPERFAMILY RNA-binding domain, RBD 182 270 IPR035979 GO:0003676
Lapu9g01167 554 MobiDBLite consensus disorder prediction 12 188 - -
Lapu9g01167 554 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 384 478 IPR029123 -
Lapu9g01167 554 Gene3D - 287 383 IPR012677 -
Lapu9g01167 554 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 483 536 IPR000504 GO:0003723
Lapu9g01167 554 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 363 IPR000504 GO:0003723
Lapu9g01167 554 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 258 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01167 Lapu-Chr9 25208838 25226794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01167 200 377 Eukaryotic Initiation Factors Gene Family AT3G16380 28.495 9.75e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01167 K13091 - gmx:100802446 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03398 3 57218282 57226434 Lapu9g01167 9 25208838 25226794 ECH
Lapu9g01167 9 25208838 25226794 Lapu9g01167 9 25208838 25226794 ECH
Lapu3g03398 3 57218282 57226434 Lapu9g01167 9 25208838 25226794 PCT