Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01164 ATGGATTTGGACGATTTCCGATCCATATTGGACACTTCGGGCGTCGACGTCTGGATGTTCATCGACGCCGCAATCGCCGTCGCCTCCGCCGATTGCGCCTCCGAATTGAAGCGCCGCCGCGACTCCATCGTGGAGAGCCTCTACTCCGCCACGGCAGCGCCTCCGCGGTGCCGCAATTGTGACGACGGCCACCGCCTCAGGCCCAACGGCCACCAAATCATGAAGCAAAACAGCCCTAGCCCTAGCCCCGAGCGGCAACCTCACCAACGCCGCGCCGCCGCCGCCGCCAATTCCCCCGCGACGCCACAGTCTCTGGAAAACGATGACGGCGACGAGGAGTTGGATCCTTACGGTGGTTTGTTCGACGACGAACAGAAGAAGATTCTAGAGATTAAAGAGCAACTCGAAGAGCCTGACCAGTCTGAAGATTCCTTGGTGGAGTTGCTGCAAAGCCTCGCGGACATGGATATTACATTCCAAGCTTTGAAGGAAACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACGTTCGTCGATTGGTGAAGCTGCTTGTCAGGAAGTGGAAGGAAATTGTGGACGAGTGGGTGAAATTGAATCCACAGGGAGGAAGCAACACTCTCATGGCTGATGGAGACTCGCCTGTGCAGAAAACCACCCAAAATGGGCATCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACACAAACCGAAAGTAATTCCCCGCAGTGAACCTCGGCCAAAACCCGCTCCGGCACCGTCAGTTTCAACCCCTGCTTCCGCTTCTCAAAACAGACAAAGGGACAGCAGTTTTGACGCGGAGAGGCTTGCTTCAGCCAGAAGGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGGCAAAGAACGATTCAGGTGATGGACATCAATGAGTTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGGAAGAACAAAGGTGGTGGTGGTTCTCAGGGAAGGCACTGGTGA 1062 0.5405 MDLDDFRSILDTSGVDVWMFIDAAIAVASADCASELKRRRDSIVESLYSATAAPPRCRNCDDGHRLRPNGHQIMKQNSPSPSPERQPHQRRAAAAANSPATPQSLENDDGDEELDPYGGLFDDEQKKILEIKEQLEEPDQSEDSLVELLQSLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQGGSNTLMADGDSPVQKTTQNGHHHQIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVIPRSEPRPKPAPAPSVSTPASASQNRQRDSSFDAERLASARRRLQENYKEAENAKRQRTIQVMDINELPKSKPKNAFFGKNKGGGGSQGRHW* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01164 353 MobiDBLite consensus disorder prediction 58 119 - -
Lapu9g01164 353 ProSiteProfiles TFIIS N-terminal domain profile. 123 200 IPR017923 -
Lapu9g01164 353 SMART TFS2_5 128 199 IPR003617 GO:0005634
Lapu9g01164 353 CDD TFIIS_I 125 198 - -
Lapu9g01164 353 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 353 IPR044790 -
Lapu9g01164 353 Pfam TFIIS helical bundle-like domain 148 197 IPR017923 -
Lapu9g01164 353 MobiDBLite consensus disorder prediction 204 353 - -
Lapu9g01164 353 Coils Coil 295 322 - -
Lapu9g01164 353 MobiDBLite consensus disorder prediction 71 85 - -
Lapu9g01164 353 MobiDBLite consensus disorder prediction 204 231 - -
Lapu9g01164 353 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 122 209 IPR035441 -
Lapu9g01164 353 MobiDBLite consensus disorder prediction 290 318 - -
Lapu9g01164 353 MobiDBLite consensus disorder prediction 251 265 - -
Lapu9g01164 353 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 210 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01164 Lapu-Chr9 25178271 25183428 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lapu9g01164 Med26 3.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01164 - - gmx:100804034 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01164 9 25178271 25183428 Lapu9g01164 9 25178271 25183428 ECH
Lapu9g01164 9 25178271 25183428 Lapu3g03403 3 57275749 57278225 ECH
Lapu3g03403 3 57275749 57278225 Lapu9g01164 9 25178271 25183428 PCT