Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01158 ATGCTGCAAATCTCTACTTCACCGGAAACCCCTCTTGGGAATCCGGAGGGAAACGCCGCGCCGGTCTCCGAGGACCTCAAAGCGGAGCACGACGACGACGGTGACCGGAATTCCGCCGCGAGCCGCTGGCCTAAAGAGGAGACAATGGCTTTGCTCAAGATAAGGTCTGACATGGACGTTGCTTTCAGAGATACAAACCCCAAAGCCCCTCTTTGGGAACAAGTCTCAAGGAAATTAGCGGAGCTAGGATATAACAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACATTTACAAGTATCATAGGAGAACCAAGGAAGGTCGTTGTGGCAAATCCAACAGTAGCAAGACTTATAGATTTTTCGAGCAATTGGAAGCTTTAGAAGGACACCACTCACTCCCCCCTCCTTCTATAAGCGCCCCAGAAACAACTACAACAACCCACGTGCGCGACAACAACACCAACGATGATGTTATTTTAGATGCGGTTCCGTGTTCCGTGAGTGCGTACGTGGGGGAGCATTCTAGTTCGACGACTTCGTGTTCGGGGAAGGGGTTTAGGAAGAGGAAGCTGACGCAGTTTCTGGAGGGGTTGATGAGGGAAGTGATAGAGAAGCAAGAGACGCTGCAGAGGAAGTTTATGGAGGTGTTGGACAGGTGCGAGAAGGATCGAATGGCGAGGGAGGAAGCGTGGAAGAAGGAGGAGCTGGCGCTGATTAAGAAAGAGCGAGAGCTTCTCGCTCAGGAACGCTCGATCGCCGCGGCTAAAGATGAAGTCGTCCTCGCTTTTCTAAGAAAGTTTGCCCAAGCTGAAGGCACGGTGCAGTTGCTGGAGAAAATTCAGGTTCAAAACAACACCCACAAGGACATGCAACAAAATGGGAATATCAATGTTAATGCCAATGGAAGTGGTGGTGATGGTGATGTGACTGATATGGATAAGCGAGAGTGTGGGAACAGTGTGAGTGTTAGGAATTTCGTGCATATGAGTAGTTCGCGGTGGCCGAAGGATGAAGTGGAGGCTTTGATAAGGTTGAGGACTGAACTTGATGTGCAGTCGCAAGGGAACAATAATCATAGTAATGGTGTGTCTAAGGGGCCTCTTTGGGAGGACATATCTTCGGCCATGAAGGGCCTTGGGTACGAGCGCAGTGCGAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTATTTCAAGAGGATGAAGGAGAAGAACAAGAGGAAGCCTCAGGATTCCAAAACCTGTCCATATTATCACCACCTGGAGGTTTTGTACAGCAAGAAGCCCAAGAGGGTGGATGTAAATGATTTTGGGAAGGAGTTGAAGCCCGAGGAGCTGCTGATGCATATCATGGAGAGTCAAAGTCAAGAAGAGAGACAAGCGCAGCAAGAACAGGTACAGAGTCAGTCATCATCTGAAGATGGTGAGAGAGAGAATAGGGATCAGAAGGAGGGAGACGATGAAGATCAAAATGGGTTTCAGAATCTGGTGGTTGAAAACGGTCCTTCCATAACAATCATGAGTTAA 1533 0.4892 MLQISTSPETPLGNPEGNAAPVSEDLKAEHDDDGDRNSAASRWPKEETMALLKIRSDMDVAFRDTNPKAPLWEQVSRKLAELGYNRSAKKCKEKFENIYKYHRRTKEGRCGKSNSSKTYRFFEQLEALEGHHSLPPPSISAPETTTTTHVRDNNTNDDVILDAVPCSVSAYVGEHSSSTTSCSGKGFRKRKLTQFLEGLMREVIEKQETLQRKFMEVLDRCEKDRMAREEAWKKEELALIKKERELLAQERSIAAAKDEVVLAFLRKFAQAEGTVQLLEKIQVQNNTHKDMQQNGNINVNANGSGGDGDVTDMDKRECGNSVSVRNFVHMSSSRWPKDEVEALIRLRTELDVQSQGNNNHSNGVSKGPLWEDISSAMKGLGYERSAKRCKEKWENINKYFKRMKEKNKRKPQDSKTCPYYHHLEVLYSKKPKRVDVNDFGKELKPEELLMHIMESQSQEERQAQQEQVQSQSSSEDGERENRDQKEGDDEDQNGFQNLVVENGPSITIMS* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01158 510 ProSiteProfiles Myb-like domain profile. 35 99 IPR001005 -
Lapu9g01158 510 Gene3D - 335 402 - -
Lapu9g01158 510 Gene3D - 43 104 - -
Lapu9g01158 510 MobiDBLite consensus disorder prediction 138 154 - -
Lapu9g01158 510 CDD GT1 41 106 - -
Lapu9g01158 510 FunFam Trihelix transcription factor GT-2 335 402 - -
Lapu9g01158 510 MobiDBLite consensus disorder prediction 132 155 - -
Lapu9g01158 510 MobiDBLite consensus disorder prediction 1 46 - -
Lapu9g01158 510 PANTHER FI21293P1 20 487 - -
Lapu9g01158 510 Coils Coil 239 259 - -
Lapu9g01158 510 MobiDBLite consensus disorder prediction 454 510 - -
Lapu9g01158 510 FunFam Trihelix transcription factor GT-2 43 104 - -
Lapu9g01158 510 CDD GT1 333 404 - -
Lapu9g01158 510 Pfam Myb/SANT-like DNA-binding domain 41 128 IPR044822 -
Lapu9g01158 510 Pfam Myb/SANT-like DNA-binding domain 333 424 IPR044822 -
Lapu9g01158 510 MobiDBLite consensus disorder prediction 473 492 - -
Lapu9g01158 510 MobiDBLite consensus disorder prediction 23 46 - -
Lapu9g01158 510 ProSiteProfiles Myb-like domain profile. 333 397 IPR001005 -
Lapu9g01158 510 SMART sant 331 399 IPR001005 -
Lapu9g01158 510 SMART sant 39 101 IPR001005 -
Lapu9g01158 510 MobiDBLite consensus disorder prediction 495 510 - -
Lapu9g01158 510 MobiDBLite consensus disorder prediction 455 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01158 Lapu-Chr9 25117490 25120103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01158 35 432 Trihelix Transcription Factor Family AT1G76880 44.079 4.69e-107 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lapu9g01158 Myb_DNA-bind_4 4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01158 - - pvu:PHAVU_009G147500g 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01158 9 25117490 25120103 Lapu9g01158 9 25117490 25120103 ECH