Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01156 ATGTATTCTGCTGCTACTTCCCTCACTTCACCACTCCTCCATGACCTTCACAACTTCCACTCAAGAAGGTTACTCCTTCACTCCCCACTCAACCAATCAGCCAAGCCCCCAGCAACCACCCACGATTCCACAGAAACATATCTTGGAGATGGAAATTTCGATGCAAATGTTGTCATGGTACTCTCAGTCCTACTCTGTGCACTCATCTGCTCCTTAGGTTTGAACTCCATCATAAGGTGTGCACTTAGATGTTCCAATTTCGTAGTGAGTGACTCAGTGGCAACCAACAACCCTCCAGCAAGAGTGGCCAACACAGGAGTGAAGAAGAAAGCCCTCAAGACTTTCCCCACAGTGAGTTACTCGGCTGAGCTGAACCTGCCAAGTTTGGATTCAGAGTGTGTGATATGTTTGTCAGAGTTCACAAATGGTGACAAGGTGCGCATTTTGCCTAAGTGCAACCACGGCTTCCACGTACGCTGCATTGACATATGGCTAAGTTCACACTCTTCATGCCCCAAATGCAGACACTGCCTAATTGAGACTTGCCAAAAGATTGTTGGGTGTAGTCAGCAAGCTAGCTCGTCTCAACAACCAGTGTTGCAGCAGGTGCCAGAAACCCTTGTGACCATCACGCCACTGGAGCCAGAAGGTCTGGTGCGTAACTATAGGGAACTTAGCTAA 681 0.4831 MYSAATSLTSPLLHDLHNFHSRRLLLHSPLNQSAKPPATTHDSTETYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNNPPARVANTGVKKKALKTFPTVSYSAELNLPSLDSECVICLSEFTNGDKVRILPKCNHGFHVRCIDIWLSSHSSCPKCRHCLIETCQKIVGCSQQASSSQQPVLQQVPETLVTITPLEPEGLVRNYRELS* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01156 226 CDD RING-H2_EL5-like 132 175 - -
Lapu9g01156 226 PANTHER RING-H2 FINGER PROTEIN ATL78 16 218 IPR044602 GO:0016567|GO:0016740
Lapu9g01156 226 Pfam Ring finger domain 132 175 IPR001841 -
Lapu9g01156 226 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Lapu9g01156 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 179 IPR013083 -
Lapu9g01156 226 FunFam RING-H2 finger protein ATL73 92 180 - -
Lapu9g01156 226 SUPERFAMILY RING/U-box 111 180 - -
Lapu9g01156 226 SMART ring_2 133 174 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01156 Lapu-Chr9 25097196 25097876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01156 23 179 C3H Transcription Factor Family AT3G10910 47.305 6.86e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01156 K19040 - gmx:100787934 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01156 9 25097196 25097876 Lapu9g01156 9 25097196 25097876 ECH