Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01151 ATGGTAAGAGCCAGAGACGATCTATGCATCAACGTTCCCTCTTTCTTCAAGTGCCCTATTTCTCTTGATGTTATGAAATCCCCAGTCAGCCTCTGCACCGGAGTCACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACGCCGGCAACAACACCTGCCCCGCAACCATGCAACTCCTCCAAACCAAAGACTTCGTTCCCAACCGAACCTTACAAAGCCTCATCCAGATCTGGTCCGATTCCCTTCGCCACTCCACCCTTCCCCACCCCCTCCTCTCCCCGGACCAAGTCCTCCCAACCCTCGCTCAATTGGAAACCCACTCTCTCCGCTCCTCTGCGCTCACCAAACTGCTCCAATTCGCCAAACATTCTCACCATAACAAACTCTTCCTTGCCAATCTAGAACCCTTCGTCAACCAACTAGTTCGTTTCCTCGACAATGCCCATGGAGGACTCGTCGCCCGACCTGCTATTCAATTTCTCGAACAAGTCGTCCTTCTGTTAGCTCTGATTCTCGATAGCGTCGAAGATCGCGATGGATTGAAAAACTCTTTGCTCAAAGGAAACAAACAAAGCTTAGATTCTCTGCTTCTCGTTCTGCAACGGGGACCCTGCGATTCCAAAATCGCCTCCGTTAGGGTTCTGCAATTCATCGCCGCGGACGCGGAGTCGAAGATTTTAATTGCGGAGAAGGAAGGCGTGATCGCCGAATTGCTGAAATCGGCGGCGCCGGAGAAAGACCCGGCGCTGGTCGAGGCCGCGCTGGCGAGCCTGGTCGCGATTTCGACGCCGAAGCGGAACAAATTGAAGCTGGTGAGTCTCGGCGCGGTGAAGGCGCTGTCGAGGCTGCTGACGGAGGCGAAGCTGGGCGCTGCGGCGGTGGAGAAGGTGCTTAAGCTGGTGGAGACAGCGTCGTCGACGAGGGAGGGGCGAAAGGAGATATGCGAGGACGCAGTGTGCGTGGCGGCGGTGCTGAGCAAGGTTCTGAAGGTGTCGAGCGTGGCGACGGAGCATGCGGTGACGACGCTGTGGAGCGTGTGCTACCTGTTTCGCGATCGCAAGGCACAGGAGGCGGTGACCCAGGCCAATGGGTTGACCAAGATTCTGTTGCTGATGCAGAGCAATTGTACGCCGCAAGTGCGCCAAATGTGCACCGATTTGCTAAAGATCTTTCGGGTGAACTCCAAGTCATGCCTTTCGTGCTACGACACCAAGACTACCCATATCATGCCGTTTTGA 1239 0.5577 MVRARDDLCINVPSFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDAGNNTCPATMQLLQTKDFVPNRTLQSLIQIWSDSLRHSTLPHPLLSPDQVLPTLAQLETHSLRSSALTKLLQFAKHSHHNKLFLANLEPFVNQLVRFLDNAHGGLVARPAIQFLEQVVLLLALILDSVEDRDGLKNSLLKGNKQSLDSLLLVLQRGPCDSKIASVRVLQFIAADAESKILIAEKEGVIAELLKSAAPEKDPALVEAALASLVAISTPKRNKLKLVSLGAVKALSRLLTEAKLGAAAVEKVLKLVETASSTREGRKEICEDAVCVAAVLSKVLKVSSVATEHAVTTLWSVCYLFRDRKAQEAVTQANGLTKILLLMQSNCTPQVRQMCTDLLKIFRVNSKSCLSCYDTKTTHIMPF* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01151 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 77 IPR013083 -
Lapu9g01151 412 SUPERFAMILY RING/U-box 6 80 - -
Lapu9g01151 412 Gene3D - 78 400 IPR011989 -
Lapu9g01151 412 FunFam RING-type E3 ubiquitin transferase 4 84 - -
Lapu9g01151 412 PANTHER WDSAM1 PROTEIN 11 400 IPR045185 GO:0061630
Lapu9g01151 412 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Lapu9g01151 412 CDD RING-Ubox_PUB 13 65 IPR045210 -
Lapu9g01151 412 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Lapu9g01151 412 SUPERFAMILY ARM repeat 187 398 IPR016024 -
Lapu9g01151 412 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01151 Lapu-Chr9 25054352 25055789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01151 5 412 U-box Gene Family AT5G64660 50.239 5.39e-142 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01151 - - gmx:100801033 612.453