Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01143 ATGAGTGGCAGTGGCAAAAAGCGCTCTTCAAAGTGGGATATGAGAGTTGATCCTGAATTTTCACCTGATGATAGTAAGCAATTACGGTCTGGGTGGTCCTCTGCAGATGTTGCTGGTAGCAATAGTTCGAAGTGGTCTTATTTGGAAGGAAGTGATAAATTAAAGCCTGCTATGGGATTTTCATCCAAAGAACCTTTTTCTGGAGGCAGAGGTTCACATAAGGATGATGTTATGAATAAAGACTATGGAAGTTTGGATTCAGCATTGGAATGGGATGAGGAAGGAAGCTACAGCAAGAAAATTTCTCCTGGATCTGAGGAATGGAAACATAAGAGACATAGTCAATCCCCTAAAAATGGTTGGAGTAGGTCAGTCAGGAGTCGAAGCAGGAGCCCTCCTCATGGTTTTAGGTGGGATTCAGGAGTCAATGACAGAAACAGAATGCGAACTGGAGGATCGACACAACCATGTAGAGACTTTGCTGCTGGTAAATGCAGAAGAGGCAGTCATTGCCATTTTCTTCATGATAGTCAAAATCATGAGGATAGTTGGGAAAATAAGAGCAGGGAAGATGGAGCTCCTAGATATTCTGCTCCCCATGAGGGTAGAGACTATCCTCTTAAGAGTGGAAGATCTAATGAAGCTTGTACTAGTTTTGCAAAGGGCAGGTGTAGAATGGGAGCATCATGCAAGTTTGTGCATCATGACAATTCTGATGGACATGGTAAAGTTTCTGTGGATGAATTAACTAGAGAGAGGGAAATTGATAGAAGGCACAGAGATAGTTCTTTTGAGCAAGGTGGCGGGCATGGACCAAACCGAAGTGGGGATACGCTTTGCAAATTTTTTGCTAATGGAAATTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGTAGGAGCCCTAATAGAAGACCAAGAGATGATAGATGGGCAAGCAATCCTGGGGCAGATCACCATAGGCTGGATAGACCGAAATTGAGTGATTCAGATAGTCCTAATAGAAGGCCAAGGGATGATAGGTGGGATTCAGATGGTAACAAGGCTGATGCAGATAAAGTTTGGGACAGTCCAAAGTGGAATGATACAGTTGCTGCCTCTGATTCAGCAAAGCTGGTTGAGGACAAAAGTGAAAATGTTGGTGCTGCTGAGCCAGGATTCACTCCTTTACCTACAAGGTATGGATGGAGTCATAGTTTGGATAAGAGCAGAGTGCATAGTGAACAGCCTTTTTCAAGTGATAAGAAGGAAGTTGACAGTTGGATATCAGGAAATACTGCTTCCAACATTCATGTTCCCCAGTCAATAGGTACAGATATCTGGTTGGGTGATACAAAAATGTCTCCTGATTGGCATTACAGGGTGGGATCTTCCAACAGCATTGAAGAAAAGCATGAACAAAATAAGCTTGGGGTAACACAAGGTGGTACGTATTTAGCCACCTCTGAACGTGACAGAATACAAATTGGTGCAGGACAAGGCATTAATCAGAATGCAGAGAGTTTAAATCCTTTGCAATCTTCAAGCTCCCAAGCAGTTGGACAAAGTCAGGTACCAGTTCCGATTCTATCTTCAAAGGGAGGAATTGTTGATGGTATGCCAAACCAGGAAGTCTCTACTGAGAAAAAATACACTGCAGAACCACATATCATGGATGCAAGCTTATCACAAGTTAGTTCAAGAAATCCTCCTCCCACTGAGAATCTTGTAGGCCAAGAACAGCTTGCTCAGCTTACCAATCTCTCAGCCTCTCTGGCCCATATACTTGGGACAGGTCAACAGCTGCCGCAACTTTATGCTGCTTTAAATTCTCATTATTCCAAGGACACATCGTCCCTAGCAAAAGCTGAGGTGTCCGCTGTGCCTGTTTCCAATACATTCATCCGACATGATCCTGCCGTGCCTGTTTCCAATACATTCATCCACCCTGATTCTGCTGTTGGACTCCCAAAGCAGTATGATCCAATGTGTGATAGTGTTGAGCCAAAGAGTGCTGTTGCAAGTGGGTTACCCTCATCCATTCCTTCTAGTAAAAGAGTTGCAGAAGATGTACTGGAAATTCCATCACAGTTATCGGACACATCAAGACAAAATCATGGTGATTCTTCCAAGGCTACTGGCTCAGAAGCACTTGTCAAGAATGATCCTCTAATACAGATGCAACCAGGTCAAAACACGCCAGTTGATAAGGATAATAACAAGGAAGTGTTACCTGAGGAAAGACACAAATCTCAAGATGATCCTAAAAGTACCAAAGAGAACGGTCCTTCGGAAAACGTGGAGCAAACTGGAGGTCCTGATGAGGCCAAGAAAACAAAGGATTTGAAGGGGATTCGTGCATTTAAATTTGCACTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGAAGACTATAAAACAATCGTGAAGAAAGTTGTTGATAAAGTAACTGGTTCCATGCAGGGGGCTAATATTCCGCAGACACAAGAGAAAATTGACAACTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCGTATGTGGAAAAGGTTCAGAAGGCTTAA 2592 0.4275 MSGSGKKRSSKWDMRVDPEFSPDDSKQLRSGWSSADVAGSNSSKWSYLEGSDKLKPAMGFSSKEPFSGGRGSHKDDVMNKDYGSLDSALEWDEEGSYSKKISPGSEEWKHKRHSQSPKNGWSRSVRSRSRSPPHGFRWDSGVNDRNRMRTGGSTQPCRDFAAGKCRRGSHCHFLHDSQNHEDSWENKSREDGAPRYSAPHEGRDYPLKSGRSNEACTSFAKGRCRMGASCKFVHHDNSDGHGKVSVDELTREREIDRRHRDSSFEQGGGHGPNRSGDTLCKFFANGNCRNGKYCRFSHDRQACRSPNRRPRDDRWASNPGADHHRLDRPKLSDSDSPNRRPRDDRWDSDGNKADADKVWDSPKWNDTVAASDSAKLVEDKSENVGAAEPGFTPLPTRYGWSHSLDKSRVHSEQPFSSDKKEVDSWISGNTASNIHVPQSIGTDIWLGDTKMSPDWHYRVGSSNSIEEKHEQNKLGVTQGGTYLATSERDRIQIGAGQGINQNAESLNPLQSSSSQAVGQSQVPVPILSSKGGIVDGMPNQEVSTEKKYTAEPHIMDASLSQVSSRNPPPTENLVGQEQLAQLTNLSASLAHILGTGQQLPQLYAALNSHYSKDTSSLAKAEVSAVPVSNTFIRHDPAVPVSNTFIHPDSAVGLPKQYDPMCDSVEPKSAVASGLPSSIPSSKRVAEDVLEIPSQLSDTSRQNHGDSSKATGSEALVKNDPLIQMQPGQNTPVDKDNNKEVLPEERHKSQDDPKSTKENGPSENVEQTGGPDEAKKTKDLKGIRAFKFALVEFVKELLKPTWKEGQITKEDYKTIVKKVVDKVTGSMQGANIPQTQEKIDNYLSFSKPKLNKLVQAYVEKVQKA* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01143 863 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 862 - -
Lapu9g01143 863 ProSiteProfiles Zinc finger C3H1-type profile. 274 301 IPR000571 GO:0046872
Lapu9g01143 863 MobiDBLite consensus disorder prediction 26 48 - -
Lapu9g01143 863 MobiDBLite consensus disorder prediction 300 361 - -
Lapu9g01143 863 Pfam RNA-binding, Nab2-type zinc finger 215 234 - -
Lapu9g01143 863 Gene3D - 270 329 - -
Lapu9g01143 863 SMART c3hfinal6 151 177 IPR000571 GO:0046872
Lapu9g01143 863 SMART c3hfinal6 211 236 IPR000571 GO:0046872
Lapu9g01143 863 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Lapu9g01143 863 MobiDBLite consensus disorder prediction 692 776 - -
Lapu9g01143 863 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 154 176 IPR000571 GO:0046872
Lapu9g01143 863 MobiDBLite consensus disorder prediction 235 265 - -
Lapu9g01143 863 MobiDBLite consensus disorder prediction 300 395 - -
Lapu9g01143 863 MobiDBLite consensus disorder prediction 177 208 - -
Lapu9g01143 863 ProSiteProfiles Zinc finger C3H1-type profile. 210 237 IPR000571 GO:0046872
Lapu9g01143 863 MobiDBLite consensus disorder prediction 736 758 - -
Lapu9g01143 863 MobiDBLite consensus disorder prediction 92 114 - -
Lapu9g01143 863 MobiDBLite consensus disorder prediction 177 211 - -
Lapu9g01143 863 SUPERFAMILY CCCH zinc finger 276 299 IPR036855 GO:0046872
Lapu9g01143 863 MobiDBLite consensus disorder prediction 1 156 - -
Lapu9g01143 863 Gene3D - 147 250 - -
Lapu9g01143 863 MobiDBLite consensus disorder prediction 8 24 - -
Lapu9g01143 863 ProSiteProfiles Zinc finger C3H1-type profile. 151 178 IPR000571 GO:0046872
Lapu9g01143 863 MobiDBLite consensus disorder prediction 692 713 - -
Lapu9g01143 863 MobiDBLite consensus disorder prediction 235 276 - -
Lapu9g01143 863 Pfam CCCH-type zinc finger 279 299 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01143 Lapu-Chr9 24931343 24940360 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu9g01143 zf-CCCH 3.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01143 - K22909 gmx:100783856 1393.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01143 9 24931343 24940360 Lapu9g01143 9 24931343 24940360 ECH