Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01142 ATGTATGTTTTTGAAGCAGACGAAGAGGAAGAGCTGGGAGCGATGAAGGAGATGATGTACCAAATGGCAGCGATGCAACCGGTGGATATAGACCCCGCCACCGTCAGAAAACCAAAGAGGCGAAACGTGCGCATAAGCGACGACCCTCAGAGTGTGGCTGCACGTCACAGAAGAGAGAAGATCAGTGAGAAAATCCGCATCCTCCAAAGACTTGTCCCTGGTGGAACCAAAATGGACACTGCTTCCATGCTTGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATCAGGCTGCTTCAATCAACTCCGCCACAAATTGATTGCATTAATGGTGCTGCTCCTAACACTGATTTGCCTTTTGCACCAATTACATCGCACGCTTCCACCTCCATCAACATGCCTCTTGGAATGGAATTCAACGCCAGAATTCATGGCCATGATGCTGATTCGATCCACCTTCAACATTCATGA 477 0.478 MYVFEADEEEELGAMKEMMYQMAAMQPVDIDPATVRKPKRRNVRISDDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPPQIDCINGAAPNTDLPFAPITSHASTSINMPLGMEFNARIHGHDADSIHLQHS* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01142 158 Gene3D - 48 109 IPR036638 GO:0046983
Lapu9g01142 158 SMART finulus 51 100 IPR011598 GO:0046983
Lapu9g01142 158 CDD bHLH_AtIND_like 46 103 - -
Lapu9g01142 158 Pfam Helix-loop-helix DNA-binding domain 55 94 IPR011598 GO:0046983
Lapu9g01142 158 FunFam BHLH transcription factor 48 110 - -
Lapu9g01142 158 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
Lapu9g01142 158 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 7 127 IPR045843 GO:0003700|GO:0006355
Lapu9g01142 158 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 108 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01142 Lapu-Chr9 24922059 24923002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01142 12 106 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 87.879 5.40e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu9g01142 HLH 6.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01142 - - var:108331264 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01142 9 24922059 24923002 Lapu9g01142 9 24922059 24923002 ECH
Lapu3g03425 3 57492735 57493739 Lapu9g01142 9 24922059 24923002 PCT