Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01134 ATGGCCCGCAAAAATTCGACTCCAGGGTTTCGGTTCCGTCCCACCGACGTTGAGTTGATTGAGTTTTTTCTGAAGAGGAAGGTTCGGGGTAAGAAAATTCCTACCGGAGTAATGGCGGAGCTTGACTTGTACAAATATGCTCCGTGGGATCTTCCAGATAAGTCTGCGCTCCAGAATGGGGATTTGGAATGGTACTTCTTTTGCCCGCAGGGGAAGAAGTATTTGACTGGAGGGAGGTTGAACCGGGCGACCGAGGCTGGGTACTGGAAGACTACTGGGAAGGATAGAGCGGTGGAACACAAGAACCGAGTTGTGGGGATGATTAAAACTCTGGTTTTTCACACCGGTAGAGCCCCTAAGGGAGATCGGACTGATTGGGTTATGCATGAATTCAGACTTGATGACAAGGAGATGGTTGACGAAGGCATTTCTCAGGACTCCTATGTAATTTGTAGGGTGTTCCAAAAGGAAGGTCCTGGTCCTAGGAATGGTGCACAATATGGTAAACCATATGATGAGAAGGACTGGGATACAGATGAAGAAATTGATTCGGTGCAATCTGACCATGTTGCTTCTGTGTTGACACCTGCTCCTATACAGCCCACTGAAAGTCGTAGTTCTATTGCAAATGACATTCATCCCTCTACAAGTGGATGTGCTGGATTGACCTCTGTATCATGTGCATCAAAATCGATGCCTACTTGCTCAGCACATCCTGCAACTCCTAACAATCAAGTCGACTCTGTATCATGTGTATCAGAATTGACGCTCCCTTGCTCAGCACTACCTTTTGCTCCAAACTATGCAGCAGATTCTGTATCGCGTCTATCAAAATTGACACCCTCTTGCTCAGCAGTTCCTTTTGCTCCAAAGTATGACGTTGACTCTGTATCTTGTGTATCAAAATTGATGCCCTCTCGCTCAGCACTACCTTTTGCTCCAAACTATGAAGTTGACTCTGTATCGTGTGTATCAAAATTGATGCCCGCTTGCTTGCCACTTGCTGCGGCTCCAAACAATCTAGTTGACACTTTATCATCTGTATCAGAATTGATGCCCTCTTGCACGACACATCCTTTGGCTTCATCTCCAAACCGTCAAGATGATGATAACGTTTTATCTTTGCTAGATTATTTCAAAGAAGATGATGGCACAAAGGCTGTGGACGAAAACAATGGAATTGAGAAGGGTGATCCTGATCAGGTGAATAATGCTGAATGCGCACCATGTTTGGATTCAAATGTGATTTTTGAGAACTTAGGAGACCTTGACAGCTTGGTGGGATTGGGTGAAGGCAGTTTCTTCTGTGGCCAGAAAAATGGACTTTCTACAAGCGATATGCTTTATACAGGCGTTGATGATATGTTCGGGTCTTGGGACCCCCAAGACTACTTGGAGTTGACGGACCTAGAGGGGCACTGCCCTGGCAGAAAAACCGTGGAGGTTCCTGCGAAGACAAGTAAAGGTTAG 1470 0.4592 MARKNSTPGFRFRPTDVELIEFFLKRKVRGKKIPTGVMAELDLYKYAPWDLPDKSALQNGDLEWYFFCPQGKKYLTGGRLNRATEAGYWKTTGKDRAVEHKNRVVGMIKTLVFHTGRAPKGDRTDWVMHEFRLDDKEMVDEGISQDSYVICRVFQKEGPGPRNGAQYGKPYDEKDWDTDEEIDSVQSDHVASVLTPAPIQPTESRSSIANDIHPSTSGCAGLTSVSCASKSMPTCSAHPATPNNQVDSVSCVSELTLPCSALPFAPNYAADSVSRLSKLTPSCSAVPFAPKYDVDSVSCVSKLMPSRSALPFAPNYEVDSVSCVSKLMPACLPLAAAPNNLVDTLSSVSELMPSCTTHPLASSPNRQDDDNVLSLLDYFKEDDGTKAVDENNGIEKGDPDQVNNAECAPCLDSNVIFENLGDLDSLVGLGEGSFFCGQKNGLSTSDMLYTGVDDMFGSWDPQDYLELTDLEGHCPGRKTVEVPAKTSKG* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01134 489 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Lapu9g01134 489 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Lapu9g01134 489 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Lapu9g01134 489 FunFam Nac domain-containing protein 86 15 159 - -
Lapu9g01134 489 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Lapu9g01134 489 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01134 Lapu-Chr9 24824154 24829663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01134 1 237 NAC Transcription Factor Family AT5G64060 48.945 2.01e-80 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu9g01134 NAM 3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01134 - - vun:114164401 770.385