Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01122 ATGGAAAGAGCTAGCAGCAGCAACTGTGGTGAGAGTAAAAAGGGTTGCAGCAGAGGACATTGGAGACCCTCTGAAGATGAGAGACTTAAGAAACTTGTGAAGCAATATGGTCCCCAAAACTGGAACTTTATTTCAGAACATCTAGAAGGAAGATCAGGGAAAAGTTGTAGATTGAGATGGTACAATCAACTAGACCCAAACATAATCAAAAAGCCCTTCACCGAAGAGGATGAAGAAAGACTCCTATCGCTGCACAAAGTGAAGGGAAACAGATGGGCTGCAATAGCCAGATTCTTCCCTGGAAAAACTGACAATGCTGTCAAGAATCAGTTCCATGTATTAATGGCCAGAAGGAAGAGGGAGCGTTTGGCACATTTTGGTGACACATTTGGTCATAATCCCCTAATTAATCTTAACATGCAAAACTATAAAAACAAGGGAATGTTTGGCACGTATGCCTCACAGAAACCAACTCCTTGGACTTCATTCACTGCATCTTCAACCATCACATCATGTTTTGATATTTCTACTATGGTTAGCAAGGCTCACAGAGACTCAAACGTGCCTTCAAGTGCTATAGAGAGACCATTGTTTGATTTGCACCATTTTTCTTCTCGTAGTCCTCCAACTGTTGGTTCTTCTATTCTTGGCAGTTACTATAGTTTCACTGCCCCAGGACTTCCTAGTGTTGGCAAGGTTGTTCCCCTTCCAAATAAATTTTCAAACTATAGTTATGACCACAGACTTGTGGACTCTAACAAGGGCTGCAAAAGAGTTAAACATGCAGGTGATAGCTCCACCACATTATGCAAGTTGAGTACCAATAAGCAAGACCAACTTGAGCCTCTTAATCTCAAGCAAAAGGGTGTTTCCTTCATAGACTTTCTCGGAGTGGGAACTTCTCCTAATCATGATCACAATTCACACCATCACGCGCTTTAA 942 0.4183 MERASSSNCGESKKGCSRGHWRPSEDERLKKLVKQYGPQNWNFISEHLEGRSGKSCRLRWYNQLDPNIIKKPFTEEDEERLLSLHKVKGNRWAAIARFFPGKTDNAVKNQFHVLMARRKRERLAHFGDTFGHNPLINLNMQNYKNKGMFGTYASQKPTPWTSFTASSTITSCFDISTMVSKAHRDSNVPSSAIERPLFDLHHFSSRSPPTVGSSILGSYYSFTAPGLPSVGKVVPLPNKFSNYSYDHRLVDSNKGCKRVKHAGDSSTTLCKLSTNKQDQLEPLNLKQKGVSFIDFLGVGTSPNHDHNSHHHAL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01122 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 68 IPR017930 -
Lapu9g01122 313 MobiDBLite consensus disorder prediction 1 22 - -
Lapu9g01122 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 119 IPR017930 -
Lapu9g01122 313 CDD SANT 21 62 IPR001005 -
Lapu9g01122 313 CDD SANT 72 115 IPR001005 -
Lapu9g01122 313 FunFam MYB transcription factor 18 69 - -
Lapu9g01122 313 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lapu9g01122 313 SMART sant 69 117 IPR001005 -
Lapu9g01122 313 SMART sant 17 66 IPR001005 -
Lapu9g01122 313 SUPERFAMILY Homeodomain-like 17 111 IPR009057 -
Lapu9g01122 313 Gene3D - 71 132 - -
Lapu9g01122 313 Pfam Myb-like DNA-binding domain 18 64 IPR001005 -
Lapu9g01122 313 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Lapu9g01122 313 PANTHER MYB PROTEIN-RELATED 18 193 - -
Lapu9g01122 313 Gene3D - 18 69 - -
Lapu9g01122 313 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01122 Lapu-Chr9 24254668 24255751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01122 1 124 MYB Transcription Factor Family AT4G33450 71.200 8.67e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu9g01122 Myb_DNA-binding 7.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01122 K09422 - rcu:8263076 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01122 9 24254668 24255751 Lapu9g01122 9 24254668 24255751 ECH