Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01085 ATGTATTACCGAAGGAGAGAACAGGAGGAAAAGAAATGCAGTGAAAAAGAAACTGATAAAGATGATGATTTCGGTCAGTTCTCAGCTGACCTTATTTCTATAGAACATGACAACGTTTGGAAGTTGATTCCTGAACTTAGAGAAAAGATGCATGTCCACCAAAAGAAAGCATTTGAATTTCTTTGGCAAAATATTGGTGGGTCTATAGAGCCATCACTAATGGATGCAGAATCCAAAAGAAGAGGGGGTTGTGTCATATCTCATTCTCCTGGATCGGATAAAACTTTTCTTATCATTGCATTTCTCATTAGCTATTTAAAGCTATTTCCAGGGATGAAATCTCTTGTCCTTGCTCCAACAACCACTCTTCACACTTGGCACAAAGAATTCGTCAAATGGAATATTTCTATGCCAGTGTATCTGATTCATGGACGTGGTGGACCTCAGAAAGATGATATGCAAAATTCAATTGTTCTTCCTAGTTTTTCAAAAGTAAATGAAGGTGTCAAACATATTTTGAACTGCTTGGACAAGATAAAAAAGTGGCAAGCACACCCAGGTGTTTTGGTCATGAGTTATTCCTCATTCTTGGCATTAATTAGAGAGGAATCAGAGTTTACACCAAGAAAGTATATGGCTAAAACATTGAGGGAAGGACCTGGGATCGTGCTACTCGATGAAGGTCACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAAGTGTTGATGAAAGTGAAAACAAATATAAGAATACTACTTTCTGACCCAAATGACAGAAGGAAAAGAAAAACGGAAGAGAAGACACGCCATTTGCTAGAGTCTCAAGCTAGAAAATTGTTCTTAGACAACATTGCTAAGAAAATTGACTCAAGTAATGGAAATGAGAGGATGCAAGGTCTAAACATGTTGAGAGAAATCACAAATGATTTCATAGATATTTATGAGAGCGCAAATTTTGACAGTGTTCCTGGCTTGCAAATGTATACGTTGTTAATGAATACAACAGACATACAGAGTGAAATTTTGCAACAACTGCACACAAGAATGG 1048 0.3721 MYYRRREQEEKKCSEKETDKDDDFGQFSADLISIEHDNVWKLIPELREKMHVHQKKAFEFLWQNIGGSIEPSLMDAESKRRGGCVISHSPGSDKTFLIIAFLISYLKLFPGMKSLVLAPTTTLHTWHKEFVKWNISMPVYLIHGRGGPQKDDMQNSIVLPSFSKVNEGVKHILNCLDKIKKWQAHPGVLVMSYSSFLALIREESEFTPRKYMAKTLREGPGIVLLDEGHNPRSTKSRLRKVLMKVKTNIRILLSDPNDRRKRKTEEKTRHLLESQARKLFLDNIAKKIDSSNGNERMQGLNMLREITNDFIDIYESANFDSVPGLQMYTLLMNTTDIQSEILQQLHTRM 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01085 349 SMART ultradead3 46 291 IPR014001 -
Lapu9g01085 349 MobiDBLite consensus disorder prediction 1 21 - -
Lapu9g01085 349 Gene3D - 22 255 IPR038718 -
Lapu9g01085 349 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 75 275 IPR014001 -
Lapu9g01085 349 Pfam SNF2-related domain 54 254 IPR000330 GO:0005524|GO:0140658
Lapu9g01085 349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 254 IPR027417 -
Lapu9g01085 349 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 4 346 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01085 Lapu-Chr9 20756641 20757780 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu9g01085 SNF2_N 2.6e-11 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01085 K10875 - gmx:100781856 492.271