Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01080 ATGACCATGGAAAAAGGTCTCTTTTTAGACCTTAGAATAAGGTCAAGGAAAGCCACTTTATCAGATTGTTCCAACTTTTTACGACGTGGGATTGACATTTGTGTTCTCTCAGTCTCTCAAAGTGGTGATACTAATTCAGATGGATTCAGTGCTAATCAGATGTGGGTTGATGCTAAAATAAATTCTATACAGAGACAATCCCATAATCCAAGGTGCTTATGTCTGTATTATGTAAACTTCTATGTTAATCAAGGTTCACTTGGAAGAGAGATAAGAAGTCTTAGTAAGGAGGTTAAGATAATTAGAATCAATGAAATTGCCATCCTCCAAAAGCTTGAACGTAATACTTGTGAAGACCAACACTATCGCTGGGAATCATCCCAAGATTGCTCCAAATTATCAGATACTAAATTGATCCTAGGAAAGTTTTTATCTGATCTTTCATGGTTGGTTGTTACATCTGCATTAAAGAAGGTTTCATTTTGCGCAAGATCTTTGGAAAACAAGATTGTGTATCAAATTTTAGGTAGTGATGTCACCAGCTCTTCTTTAAACACGCATTCTCGTGTAAGTGTTGTGAATTTTGAAGTGAACCGCGATGGCTTGTTAAAGCCCATCGTTACCCAAGTTGATGTATTTGACACCAATACAAGTAGTCATGCACATGATTCCTATTATGATGAAGTGTCACCATCTTATGATGTTCAGGACTTACGACGATCCAAACGTAGGAACATACAACCTGAGCGTTACTTTGATAGTGGTAATGTTTCTGAGATAAAGGTTGGCAATGTTCGAACCTGGCCATACAAGATCAAGAAAAAGAAAGATTATGATAATGATGTGTATTCTTGCCGACAGATTTTAGTGTACAGTAGGAAGGAACTAAAGTCTGCAGAGGCCAATCAAAATGAACATCAAACTCCACTTGCATGTGTTCCTCTGCTTGAAGAGGGAGATTCTTTAGCCCTTGATTATCATACCCTCAGTGACGAGATTACTAATAGTAATGCAAATTATAGCAAGCGTGAGTATAAGAGGAAGAAATTTTTAGATCTAGAAAACGAGGAAGGTTCTGATCTTGGATGGGAAAACTTAAATTCCAATATAAACTCCAAAAAAGAAAATGCTAGAAGAAACTTAAATACAACTGCCTACAAGAAAATTATTGATTCAAGGAGGATACTAATGGAACTCCAACAAAAAGAAGAACCAAGTGTAATGGACCTGTGGAAGAAAATAAACAACTTGGAGAATAAGAATGAAACAGAAATACCTCAAAGAGAGGAAGAGGAACAAATCTCTGAGATGGATATGCTGTGGGGAGAAATGGAAATGGCATTGACATCATGTCATATTGAAGAAAGAAAGATGCATGTCCACCAAAAGAAAGCATTCGAATTTCTTTGGCAAAATATTGGTGGGTCTATAGAGCCATCACTAATGGATGCAGAATCCAAAAGAAGAGGGGGTTTTGTCATATCTCATTCTCCTGGATCGGGTAAAACTTTTCTTATCATTGCATTTCTCATTAGCTATTTAAAGCTATTTCCAGGGATGAAACCTCTTGTCCTTGCTCCAACAACCACTCTTCACACTTGGCACAAAGAATTCGTCAAATGGAATATTTCTATGCCAGTGTATCTGATTCATGGATGTGGTGGACCTCAGAAAGATGATATGCAAAATTCAATTGTTCTTCCTAGTTTTTCAAAAGCAAATGAAGGTGTCAAACATATTTTGAACTGTTTGGACAAGATAAAAAAGTGGCAAGCACACCCAGGTGTTTTGGTCATGAGTTATTCCTCATTCTTGGCATTAATGAGAGAGGAATCAGAGTTTACACCAAGAAAGTATATGGCTAAAACATTGAGGGAAGGACCTGGGATCCTGATACTCGATGAAGGTCACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAAATGTTGATGAAAGTGAAAACAGATATAAGAATACTACTTTCTGGTACATTATTTCAGAATAACTTCTGTGAATATTTTAACACACTTTGCTTGGCAAGACCGAAGTTTATTTACGAAGTGCTGAATGAGTTAGACCCAAATGACAGAAGGAAAAGAAAAACGGAAGAGAAGACACGCCATTTGCTAGAGTCTCAAGCTAGAAAATTGTTCTTAGACAACATTGCTAAGAAAATTTACTCAAGTAATGGAAATAAGAGGATGCAAGGTCTAAACATGTTGAGAGAAATCACAAATGATTTCATAGATATTTATGAGAGCGCAAATTTTGACAGTGTTACTGGCTTACAAATGTATACGTTGTTAATGAATACAACAGACATACAGAGTGAAATTTTGCAACAACTGCACACAAGAATGGGTGAGTGCACGGGGTACCCTCTGGAGTTAGAGCTTTTGATAACCCTTGGATCAATACATCCATGGTTGGTTAAAACAGCCTCATATGTAAATAAGTTTATCACTTTGGACCAGCTACAGCAGCTAGAGAAATGCAAGTTTGATTTAAAAGCAGGGGCGAAAGTTAAATTTGTTATGAGCCTTGTTGTCCGTGTTATGCAGAAGGAAAAAGTGCTTATATTCTGCCACAATCTTGCACCTGTGAAGTTTTTGGTAGGGTTATTTGAAATGGTCTTTAAATGGGAAAAGGATAGAGAAATTTTGTTGCTTAATGGGGAACATGACCTCTTTGAACGTGGAAAAGTGATAGATAAGTTTGAAGAGCCTAGAGGAGCATCAAAGGTGCTCCTTGCTTCAATTACGGCTTGTGGTGAAGGTATTAGTTTGACATCAGCTTCTAGAGTGATTTTTCTGGACTCAGAGTGGAATCCATCGAAGACAAAACAGGAAGGGCCTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTGTATCAGCTCTTGA 2901 0.374 MTMEKGLFLDLRIRSRKATLSDCSNFLRRGIDICVLSVSQSGDTNSDGFSANQMWVDAKINSIQRQSHNPRCLCLYYVNFYVNQGSLGREIRSLSKEVKIIRINEIAILQKLERNTCEDQHYRWESSQDCSKLSDTKLILGKFLSDLSWLVVTSALKKVSFCARSLENKIVYQILGSDVTSSSLNTHSRVSVVNFEVNRDGLLKPIVTQVDVFDTNTSSHAHDSYYDEVSPSYDVQDLRRSKRRNIQPERYFDSGNVSEIKVGNVRTWPYKIKKKKDYDNDVYSCRQILVYSRKELKSAEANQNEHQTPLACVPLLEEGDSLALDYHTLSDEITNSNANYSKREYKRKKFLDLENEEGSDLGWENLNSNINSKKENARRNLNTTAYKKIIDSRRILMELQQKEEPSVMDLWKKINNLENKNETEIPQREEEEQISEMDMLWGEMEMALTSCHIEERKMHVHQKKAFEFLWQNIGGSIEPSLMDAESKRRGGFVISHSPGSGKTFLIIAFLISYLKLFPGMKPLVLAPTTTLHTWHKEFVKWNISMPVYLIHGCGGPQKDDMQNSIVLPSFSKANEGVKHILNCLDKIKKWQAHPGVLVMSYSSFLALMREESEFTPRKYMAKTLREGPGILILDEGHNPRSTKSRLRKMLMKVKTDIRILLSGTLFQNNFCEYFNTLCLARPKFIYEVLNELDPNDRRKRKTEEKTRHLLESQARKLFLDNIAKKIYSSNGNKRMQGLNMLREITNDFIDIYESANFDSVTGLQMYTLLMNTTDIQSEILQQLHTRMGECTGYPLELELLITLGSIHPWLVKTASYVNKFITLDQLQQLEKCKFDLKAGAKVKFVMSLVVRVMQKEKVLIFCHNLAPVKFLVGLFEMVFKWEKDREILLLNGEHDLFERGKVIDKFEEPRGASKVLLASITACGEGISLTSASRVIFLDSEWNPSKTKQEGPFVLVSKRWFMCISS* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01080 966 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 483 683 IPR014001 -
Lapu9g01080 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 685 IPR027417 -
Lapu9g01080 966 SMART ultradead3 454 701 IPR014001 -
Lapu9g01080 966 Pfam SNF2-related domain 461 725 IPR000330 GO:0005524|GO:0140658
Lapu9g01080 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 628 949 IPR027417 -
Lapu9g01080 966 CDD SF2_C_SNF 833 949 - -
Lapu9g01080 966 Gene3D - 426 725 IPR038718 -
Lapu9g01080 966 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 10 456 IPR044567 GO:0080188
Lapu9g01080 966 Gene3D - 816 950 IPR027417 -
Lapu9g01080 966 Pfam Helicase conserved C-terminal domain 841 949 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01080 Lapu-Chr9 20213725 20217658 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01080 887 949 RAD5 or RAD16-like Gene Family AT5G05130 45.312 3.50e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu9g01080 SNF2_N 1e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01080 K10875 - gmx:100781856 784.637