Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01035 ATGAAGTATAATCAGAAAAAGAGTCTTAAATCTTATCAAGATCAAGGTTCAAATTCAGCTAGCATGGTGTTGATTGATTTTATGAAGATGTCAAAGGTTGAGGATGTTATTCAAGAACCTTCAGGTAATGAAGTGATTGATTCGTCTATTTTTTATTCAAAAGGTGTAGATAAGAAGAATACAAAGTTAGAAAAAGCAAAGACTTTTTCTTGCAACTATTGCAACAAAGAGTTTTCTACTTCACAAGCTTTGGGAGGACATCAAAATGCACACAAACAAGAACGTGCTCTTGCAAAATGTCATAGAGGCTTTGATGTTAAAGG 323 0.3313 MKYNQKKSLKSYQDQGSNSASMVLIDFMKMSKVEDVIQEPSGNEVIDSSIFYSKGVDKKNTKLEKAKTFSCNYCNKEFSTSQALGGHQNAHKQERALAKCHRGFDVK 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01035 107 Pfam C2H2-type zinc finger 69 93 - -
Lapu9g01035 107 SUPERFAMILY beta-beta-alpha zinc fingers 66 96 IPR036236 -
Lapu9g01035 107 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Lapu9g01035 107 Gene3D Classic Zinc Finger 49 104 - -
Lapu9g01035 107 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Lapu9g01035 107 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 102 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01035 Lapu-Chr9 18156688 18157010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01035 65 106 C2H2 Transcription Factor Family AT5G01860 66.667 1.97e-15 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu9g01035 zf-C2H2_6 1.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01035 - - pvu:PHAVU_009G043700g 157.918