Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01000 ATGGTTTCAACGAGACGCAACAGTGGATCTTTCTCCAACAGCAACAAGAGGCCTTCGTCTTCTGAAGACAAAACTCCCTCTCCTTCTCCCAAGCGCCAAAAGGTCGACAATGTTGCTGCCGCCTCGGAGAAACCGATGCCACCGGCGGAAAATTCCAAGGATTTGGGCATGCCGGAGCCCCCCGCTGATCCCGGAGAATGCGAATCTCGAGACATTCAGATCGCCGGCGCCGTCAATCCAGACGCCAAGGCCGACCCCACGCCGCCGATCGCCGATGGTTCTACACCGACTGTGGTTGCTGATAAACCTAGGGGTTCGTTTCCTTCTTGGGCTATATATCAGAAGCAAAACCCGAATTTTGAAGCTTCAGTTCCTTGGTGCAGACTCTTGTCTCAATCTGCGCAGAATCCGAATGTTTTAATTTGCACACCCAACTTTACTATTGGGTCTAGTAGGGGTTGCAATTTCCCGTTGAAGGATCAGACTATAAGTGGGAATTTGTGCAAGATAAAACACACGCAGCGCGAGGGAAGTGCTGTGGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCGGTGGTAGTAAATGGCACGCTCGTCAAGAAGAGTACCAGCTGTGTGCTTAATTCGGGGGACGAGGTGGTTTTTGGTTTGATTGGGAATCATTCTTATATTTTTCAGCAAATAAATCCCGAAGTTGCAGTTAAGGCTGCAGAAATTCAAGGTGGTGTCGGCAAGTTTTTCCAGATTGAAAGGAGGGCTGGAGACCCTTCAGCCGTGGCTGGAGCTTCTATTCTGGCTTCTCTTTCTAGCCTCAGACCGGATCTTACAAGATGGAAGTCTCCATCTCAGTCTGCCAGTAAACCTCATCAGGGTACTGATGTTCCTAGTCATTCTGTTCTCCCTGATGGTACAGAGACTGGGCTCGATGGTGTGGAAGGCAACTCTGCTCAAAATATAGCGACAGATAAAGCTGCTGATGTTGGAGCAAACGACAAGAATTTGCCTATGGATTGCGATTCAGATGATGCTGGCACAGAGGCAGGCAATGTATTTGAAGAAAGACATGGGACGAGGGATGCGCAAGCTGCATCGACTTCGGGTAGTTCTGTACGCTCTGCAGTTTTCAAAGAGGATGTTCATGCTGCAATACTGGATAGGAAAGAAATAGAAGTGTCCTTTGACAACTTCCCTTACTACTTAAGTGAGAATACCAAAAATGTTCTAATTGCAGCTTGCTTTATACACCTGAAGCATAGAGAACATGCAAAGTACACCACTGATCTTACAACCATAAACCCTCGTATTCTACTTTCAGGACCTGCAGGGTCAGAAATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAACACTTTGGAGCTAAATTGCTCATATTTGATAGCCATTCACTTTTGGGTGGTTTAACTTCCAAGGAAGCTGAGCTGCTCAAAGATGGATTTAATGCTGATAAATCCTGTGGTTGTGCTAAACAAAGTCCTTTAACTACAGACATGGCTAGGAGCATGGATCCACCATCTAGTGAACCAGATACACCTAAGTCCTCCAATGCACCTACTTCATATGGCTTTGAGTCTCAACTTAAGTTGGAAGCTGATAATGTACCATCTACCTCTGGGACAGCTAAAAATTGTGTGTTTAAACTAGGTGACAGGGTAAAATACAGTTCATCTTCTGGGGGAATATATCAGCTTCAGACAATTTCTTCAAGGTACAGGGGTCCAGCTAATGGTAGTCGGGGAAAGGTTGTCTTACTTTTTGATGATAATCCCTTGTCAAAAATTGGTGTAAGATTTGATAAACCGATACCTGATGGAGTTGATCTTGGAGGTTGCTGTGAGGGTGGTCAAGGATTTTTCTGCCATGTGAATGATCTTCGGCTGGAAAACAGTGGCATTGAAGAACTTGACAAATTACTCATTAATACATTATTTGAGGTTGTAGTTAGTGAGAGCAGAAATGAACCCTTCGTTTTGTTCATGAAAGATGCAGAGAAGTCTATAGTAGGAAACGGAGATCCATTTTCATTTAAAAGTAGGCTTGAAAATCTTCCGGACAATGTGGTGGTAATAGGTTCACACACTCACACTGACAGTCGCAAGGAGAAGTCGCATCCGGGGGGTTTACTTTTTACGAAGTTTGGCAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCCGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAGGTCCCAAAGCCAAACAAAACCTTAACTAAGCTTTTCCCAAATAAAGTAACAATTCACATGCCACAGGATGAAGCACTTCTAGCATCTTGGAAGCAGCAACTTGATAGAGATGTTGAGACTCTTAAAATTAAAGGAAATTTGCACAATTTACGTTCAGTTTTGAGCCGTTGTGGGGTGGAATGTGAAGGACTTGAATCCTTGTGCACTAAGGATCAAACACTTAGTATTGAAAATGCAGAGAAGATTGTTGGTTGGGCTATAAGCCGTCATCTCATGCAGAATGCTGAAACTGATCCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGCATCCAGTATGGAATTGGTATCTTACAGTCTATCCAGAATGAGTCAAAAAGCCTGAAGAAGTCTCTTAAGGATATTGTAACTGAAAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAACGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACATTGAAGGAATTGGTTATGCTTCCCCTACAGAGGCCCGAGTTATTTTGCAAAGGACAATTAACCAAGCCATGCAAGGGCATCCTTTTATTTGGTCCTCCTGGAACAGGCAAGACAATGCTTGCAAAGGCAGTTGCTACTGAAGCTGGTGCAAATTTCATCAACATTTCCATGTCAAGTATCACATCTAAGTGGTTTGGTGAGGGTGAAAAATATGTGAAAGCTGTTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTGCGCACAAAGGATACTGAGAGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAAGCTGTCATAAGGAGGCTGCCTCGGAGGTTAATGGTAAATTTGCCAGATGCTCCTAATAGAGCAAAAATATTGAAAGTTATACTGGCTAAAGAAGATTTGTCTTCTGGTCTTGATTTGAATGCAATTGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAGAATTTGTGTGTAACTGCTGCACATCGACCAATTAAAGAGATATTAGAGAAGGAAAAAAAGGAACAGGCTGCTGCTCTAGCAGAAGGTAGACCTGCTCCCGCAATAAGAGGAAGTGCAGATATCCGATCTTTAAACATGGAAGATTTCAAACATGCTCATCAACAGGTGTGTGCAAGCGTTTCCTCTGAATCCGTAAATATGACCGAGCTTCAACAATGGAATGAACTATACGGTGAAGGTGGTTCAAGAGTAAAAAGAACACTAAGCTATTTCATGTGA 3618 0.4348 MVSTRRNSGSFSNSNKRPSSSEDKTPSPSPKRQKVDNVAAASEKPMPPAENSKDLGMPEPPADPGECESRDIQIAGAVNPDAKADPTPPIADGSTPTVVADKPRGSFPSWAIYQKQNPNFEASVPWCRLLSQSAQNPNVLICTPNFTIGSSRGCNFPLKDQTISGNLCKIKHTQREGSAVAVLESTGSKGSVVVNGTLVKKSTSCVLNSGDEVVFGLIGNHSYIFQQINPEVAVKAAEIQGGVGKFFQIERRAGDPSAVAGASILASLSSLRPDLTRWKSPSQSASKPHQGTDVPSHSVLPDGTETGLDGVEGNSAQNIATDKAADVGANDKNLPMDCDSDDAGTEAGNVFEERHGTRDAQAASTSGSSVRSAVFKEDVHAAILDRKEIEVSFDNFPYYLSENTKNVLIAACFIHLKHREHAKYTTDLTTINPRILLSGPAGSEIYQEMLAKALAKHFGAKLLIFDSHSLLGGLTSKEAELLKDGFNADKSCGCAKQSPLTTDMARSMDPPSSEPDTPKSSNAPTSYGFESQLKLEADNVPSTSGTAKNCVFKLGDRVKYSSSSGGIYQLQTISSRYRGPANGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGCCEGGQGFFCHVNDLRLENSGIEELDKLLINTLFEVVVSESRNEPFVLFMKDAEKSIVGNGDPFSFKSRLENLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKIKGNLHNLRSVLSRCGVECEGLESLCTKDQTLSIENAEKIVGWAISRHLMQNAETDPDAKLVLSCESIQYGIGILQSIQNESKSLKKSLKDIVTENEFEKRLLADVIPPNDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSGLDLNAIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKEQAAALAEGRPAPAIRGSADIRSLNMEDFKHAHQQVCASVSSESVNMTELQQWNELYGEGGSRVKRTLSYFM* 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01000 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 900 1179 IPR027417 -
Lapu9g01000 1205 CDD FHA 128 226 - -
Lapu9g01000 1205 Coils Coil 861 881 - -
Lapu9g01000 1205 MobiDBLite consensus disorder prediction 499 527 - -
Lapu9g01000 1205 SUPERFAMILY SMAD/FHA domain 108 225 IPR008984 GO:0005515
Lapu9g01000 1205 Pfam ATPase family associated with various cellular activities (AAA) 941 1070 IPR003959 GO:0005524|GO:0016887
Lapu9g01000 1205 MobiDBLite consensus disorder prediction 276 299 - -
Lapu9g01000 1205 Gene3D - 125 233 - -
Lapu9g01000 1205 MobiDBLite consensus disorder prediction 276 314 - -
Lapu9g01000 1205 Pfam FHA domain 147 216 IPR000253 GO:0005515
Lapu9g01000 1205 ProSitePatterns AAA-protein family signature. 1044 1063 IPR003960 GO:0005524|GO:0016887
Lapu9g01000 1205 MobiDBLite consensus disorder prediction 1 26 - -
Lapu9g01000 1205 MobiDBLite consensus disorder prediction 1 100 - -
Lapu9g01000 1205 CDD RecA-like_ATAD1 904 1070 - -
Lapu9g01000 1205 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 899 1075 - -
Lapu9g01000 1205 Gene3D - 899 1180 IPR027417 -
Lapu9g01000 1205 Pfam AAA+ lid domain 1095 1129 IPR041569 -
Lapu9g01000 1205 Gene3D - 1073 1167 - -
Lapu9g01000 1205 SMART AAA_5 937 1074 IPR003593 GO:0016887
Lapu9g01000 1205 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 375 1204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01000 Lapu-Chr9 16029395 16041564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01000 900 1144 Calmodulin-binding Proteins AT3G56690 40.476 4.41e-41 162