Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00979 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGGTGGATGTGGATAAGGCTACCGTACCCAACATAGACTCAATGGAGGAGCATAACAGATTTGGAGTTTATAGAATGAAGGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCGTGTGGGTAATTCTGGCCCTGAATCAGCGTTAGCCATGTCCAAAGATGTTGCCGCTGGTGCTGGAGCCTCCAAAGTGGCATCCTCACCTTCAGGGTCTTCTAAGAGAGCTAGAGCCATTAACAGCACAACCCTGACTGTGTCATGCCTTGTGGACGGGTGCAATTCAGATCTTAGCAATTGTAGGGATTATCATAGGCGACATAAGGTGTGTGAACTCCATTCCAAGTCCCCAGAGGTCACAATCGGTGGCCTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAGAGAAAAAGAAGCTGCAGAAAACGTTTAGATGGACACAACAGACGGAGAAGAAAGCCTCAGCCAGAACCTCTCACGCGACCTGGTAGTTTTTTATCGAATTACCAAGGTGAGCTTTGTTGTTGCAGTTGTTGTTCTACTACCACATTATCTGAATGGACCCATGTGCATATATGCGTAGATTTCATGCAGGTATTAGCTAGAGATACATATCCACATAGGTACACGAGTACCCAATTGCTACCCTTCTCAAATCCACACGTATATCCTTCCACTGGCATGATGAGCCCCACTTGGAGTGGAGGACTTGTGACTTCTTCTGCAGATGCTAGGTTGCACAACCACCACCACCACCACCATCAAGTGCACTTGGTTGATAAACAGGACCTTTTTCTTGGATCTTCTCACAAAGAAGGGAAGCAAGTGGCATTCCTACACGGTAACCATCCCTCCACAGGTGCACTCAGCAACCAAACCCTTCCCTTTCCCTCTCCTTCTGTGTGCCACTCGCTTCTCAGGACCAGCCCTTTAGCAGAAAGTTGCGGAGTGAGAAGCAAAATGTTCTGTGAAAGCTTAACAACTTCAGATTCGGTGCATGACACTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCTGGGAATGGTTTGAACCAAATGGTGCAGCCTCCGTCGATGTCCCTGATGCAGCCCTTAGGCCTGAGCCTGCAGGATAACAGCAACTTAGAGTCTGTGGAGCGAGTTTTGGTTCCCAATGGGAGTGACCATTGTTCCTCCATGTATAGCTTGGGTTCTGATGGATCCCACTGCAATGAAGCCCCTCAACTGTTTCCCTTTCAGTGGGAATAG 1311 0.4798 MDWNLKAPSWDLVDVDKATVPNIDSMEEHNRFGVYRMKGEFSVDLKLGRVGNSGPESALAMSKDVAAGAGASKVASSPSGSSKRARAINSTTLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKSPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPGSFLSNYQGELCCCSCCSTTTLSEWTHVHICVDFMQVLARDTYPHRYTSTQLLPFSNPHVYPSTGMMSPTWSGGLVTSSADARLHNHHHHHHQVHLVDKQDLFLGSSHKEGKQVAFLHGNHPSTGALSNQTLPFPSPSVCHSLLRTSPLAESCGVRSKMFCESLTTSDSVHDTPCALSLLSSSQTHTPGNGLNQMVQPPSMSLMQPLGLSLQDNSNLESVERVLVPNGSDHCSSMYSLGSDGSHCNEAPQLFPFQWE* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00979 436 FunFam Squamosa promoter-binding-like protein 14 88 158 - -
Lapu9g00979 436 ProSiteProfiles Zinc finger SBP-type profile. 94 171 IPR004333 GO:0003677
Lapu9g00979 436 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 62 429 IPR044817 GO:0003677
Lapu9g00979 436 Pfam SBP domain 97 170 IPR004333 GO:0003677
Lapu9g00979 436 SUPERFAMILY SBT domain 95 176 IPR036893 GO:0003677|GO:0005634
Lapu9g00979 436 MobiDBLite consensus disorder prediction 158 181 - -
Lapu9g00979 436 Gene3D - 89 158 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00979 Lapu-Chr9 15374210 15378386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00979 1 436 SBP-box Gene Family AT5G50670 37.251 1.29e-68 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu9g00979 SBP 4.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00979 - - gmx:100787407 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00979 9 15374210 15378386 Lapu9g00979 9 15374210 15378386 ECH
Lapu3g03552 3 58982229 58985584 Lapu9g00979 9 15374210 15378386 PCT