Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00922 ATGATGCCCAGAATAAACGGAGTTGGATGGATGGAGGAACGTGAAGACGACAATAACTCCGCTTCTTGGGCCAGAAACAAGCCCACCAACACCATCATGGCCACCGACACAACAACCTCAGCAAAACCAACCACTGCAGCAGCAGCTTTCGTAGACAACAATACGACCCGCGACGACTTAGCTTCTCTCTGCGCCTTCAAACCCATGCTGGAACTGGACGATGAATGGTACATAACCAACCACCATCACCATAACAACCACCACCCCCAAGACATGACCTTCTCCCCCACCTTTCCTGACTCCGACAACCTCCTCCTCCCGGCCGTCGACTCCTCCTCCTGCTCCCCCTCCTCCTCCGTCTTCACCAACCTCGACCCTTCCTCCTCCCACCTCCACTACTTCCTCCCTCCCAAGCCCCCCACTCTCTCTTCCCTCCTCAACCCCTTCGACATCCCCTTTCTTGACCCTCAAGCTTCCTCCTCCTTCCCGCTTCTTCCCTCTGCCCATTTTCCCTCCGAGACGCCTCCTCAGACCGCCACCGCCTTCGCCGGCTTCCACACCCTCGACGACGGCTCCTCCAAACCTCTCTTTCACCACCGCTCCAAGATTCTGCGGCCCCTCGAGTCACTCACTCCCTCCGGGGCGCCACCCACCCTCTTTCAGAAGAGGGCGGCGCTCAGGAAGAACATGTCTGCTGGGGAAGGGAGTGAGAAGAAGAGGAAGGAGAAAGAGGAGGTGGTGGAGGATGTGAGTTTTGATGGGTCTGGGTTGAACTATGATTCTGATGATTTGACTGAGATTAATAACAACAGTGGTAAGGTGGATGAGGGTAGTGCTAAGAATGGTGGGAACAGTTCCAATGCCAACAGCACGGTCACTGGGTTGGATCAGAAAGGGAAGAAGAAGGGAATGCCTGCTAAGAATTTGATGGCAGAGCGACGCCGTAGGAAGAAGCTCAATGATAGACTCTACATGCTTAGGTCTGTTGTGCCTAAGATTAGCAAAATGGACAGGGCTTCAATTCTTGGGGATGCAATCGAGTATCTTAAGGAGCTTCTGCAAAGGATCAATGATCTCCATAACGAGTTGGAGTCTACACCGCCTGGTTCTTCCCTCACTCCTTCCTCCAATTTCCATCCTTTGACGCCTACTCCTCCCACACTGCCTAGTCGTATCAAAGAAGAATTGTGCCCCAGCTCATTGCCAAGCCCCAATGGTCAACCTGCTAGGGTTGAGGTTCGGCTACGAGAAGGAAGGGCTGTTAACATCCACATGTTTTGTGCCCGCAAACCTGGTCTGTTGCTCTCAACCATGAGGGCTATGGATAACCTTGGATTAGACATTCAGCAGGCTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGCAATGCAAAGAAGGTCAAGATGTCCATCCGGAGCAGATCAAAGCAGTTCTCTTGGATTCAGCTGGCTACAGTGGCATGATATAA 1485 0.5253 MMPRINGVGWMEEREDDNNSASWARNKPTNTIMATDTTTSAKPTTAAAAFVDNNTTRDDLASLCAFKPMLELDDEWYITNHHHHNNHHPQDMTFSPTFPDSDNLLLPAVDSSSCSPSSSVFTNLDPSSSHLHYFLPPKPPTLSSLLNPFDIPFLDPQASSSFPLLPSAHFPSETPPQTATAFAGFHTLDDGSSKPLFHHRSKILRPLESLTPSGAPPTLFQKRAALRKNMSAGEGSEKKRKEKEEVVEDVSFDGSGLNYDSDDLTEINNNSGKVDEGSAKNGGNSSNANSTVTGLDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPPGSSLTPSSNFHPLTPTPPTLPSRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRAMDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGYSGMI* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00922 494 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 163 490 - -
Lapu9g00922 494 CDD bHLH_AtAMS_like 306 371 - -
Lapu9g00922 494 MobiDBLite consensus disorder prediction 229 306 - -
Lapu9g00922 494 MobiDBLite consensus disorder prediction 1 29 - -
Lapu9g00922 494 MobiDBLite consensus disorder prediction 232 250 - -
Lapu9g00922 494 Pfam Helix-loop-helix DNA-binding domain 310 352 IPR011598 GO:0046983
Lapu9g00922 494 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 352 IPR011598 GO:0046983
Lapu9g00922 494 MobiDBLite consensus disorder prediction 363 386 - -
Lapu9g00922 494 FunFam BHLH transcription factor 299 367 - -
Lapu9g00922 494 Gene3D - 297 366 IPR036638 GO:0046983
Lapu9g00922 494 MobiDBLite consensus disorder prediction 363 378 - -
Lapu9g00922 494 Coils Coil 342 366 - -
Lapu9g00922 494 CDD ACT_UUR-ACR-like 423 483 - -
Lapu9g00922 494 SMART finulus 309 358 IPR011598 GO:0046983
Lapu9g00922 494 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 306 370 IPR036638 GO:0046983
Lapu9g00922 494 MobiDBLite consensus disorder prediction 261 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00922 Lapu-Chr9 13970300 13974005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00922 66 467 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 51.876 2.85e-117 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu9g00922 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00922 - - gmx:100217332 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01323 3 14531668 14533416 Lapu9g00922 9 13970300 13974005 ECH
Lapu9g00922 9 13970300 13974005 Lapu9g00922 9 13970300 13974005 ECH