Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00919 ATGCAGCTTCAGTGCATGGAAGAGAGTGCAGAATCCTTACGCTCGAGATGTTTCAAGTTCTACAAAGGATCTCGAAAGTACACGGAAGGGCTTGGAGAGGCATATGATGGAGACATTGCATTTGCAACTGCCCTTGAAAATTTTGGAGGAGGGCATAATGATCCTCTATTTGTAACTTTGGGAGGACCAGTAATGACCAAATTTTCAATTGCTTTGAGAGAAATCAGTACAAATAAGGAACTTCTTAGGTCACAGGCGGAGCACATGCTAAATGACCGGTTACTGAACATGCTAAACGTGGATATCCTAGATGTCAAGGAAGCTCGAAGGCGTTTTGAGAAAGCTTCACTAGTACATGATCAGGCACGTGAGAAGTTTATGTCACTGAGAAAAAGCACTAGGATTGATATTGCCACTGTCGTAGAAGAGGAATTGCACAATGCAAGAAGCTCATTTGAGGAATCTCGTTTCAATCTGGTTAGTGCTCTTCATAATGTTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGGTATTATCGACAGGGATATCAGCTATTACAAGAGCTGGAGCCTTTCATTATCGAGGTTTTGGCTTACACACAAAAGGCAAGAGAAAGTTACAATGAGGAGCAGATTACTCTTTGTGAAAGAATGCTGGAGTACAAAAAACATGTTCATCAAGAAAGTATGTTGTCCTTGAATGGCCCTTATATTTCTCCGGGTAGAGATGGGAATCCAGTGCATCCTTTTTCAAGGATATCAAATACAGTGGTAGATGCTGTCACAGAATCTGCTGAAAATGGAAAGATCCAAATCATTCGGCAAGGATATCTCTCTAAACGATCCTCAAATTTGAGGGGTGATTGGAAGAGAAGGTACTTTGTTCTTGATAGTCGTGGAATGCTTTACTACTTTCGTAAACCATGGAATGGATTACATGGTAGCAATCAATCATCCGTACACAGAACTTGTGCCACCGATAACAGTGCTGGAATTTTGAGTCGTTTGCTTTCTTCACATTACCATGGAGTTATGCCTGATGAAAAATCTGTAGCACGTCACACAGTGAACCTGCTCACATCAACAATCAAGATTGATGCTGAACAGTCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCGTCAAAGAGTTATACATTGCAGGCAGAAAATGCCCTGGATCAGATGGATTGGACGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTGCACAGACACTGTCAGATGTGTCAGAAAATGGTAACGGTTCCTCTGTCAACAAGCTTCTATTGTTACAAGGTTGTCCAGATGATGATCTAGCATTGGGTGGGGATTCTACGTCATCCGAAGACTTTCAGAAGAATAAGCAGGGTGTAAAAAGTGAAAAGCCAATTGATATTCTTAGAAAAGTTAGTGGCAATGACAAATGTGCTGATTGCGGTAAACCTGATCCAGACTGGGCATCCTTAAACCTTGGCATCCTCATATGCATTGAATGTTCCGGTGTCCACCGGAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACCCTTGATGTAAAAGTGTGGGATTCAGCTGTCTTGAGCATGCTTCATTCACTGGGGAATCACTTTGCAAACTCAGTTTGGGAGGAACTGTTGCACCCATCATGTACTTCACAAGCAGATGAGAGCTCTGATGGATCATCCAAGCCACCGAAAAAGTTATTTCATGCAAGAAAACCATCGTACGATGATCCTATTTCACTGAAGGAGAGGTTCATTCATGCAAAGTATGCTGCAAAAGTGTTTGTTAGCCGGATAACGAATAACGACTGTCTCCTTTCAACGGCACAACAGATGGCAGAAAGCATCAATGCCAATGACAAGAAAGCAGTGTACCGACACATTGTGAAATCAGATGTGAATGTCAATGCTATTAGTGGTGAAGCAGGCTTTTCTTCCAGCGTGCCTTCTTCAACTAATGATCCAAACACATCATGTGACAACACAACTCAACCAGTGCAGGACATACCAGATGGTTCTACTGTGCTTCACCTGGCATGCCTAAGTTGTGATGCTGCAATGGTAGAGCTACTCCTACAGTATGGGGCGGACCTAAATGCTATTGATTCTAAAGGAAAGACACCACTACATTACTGCACTATGATGGGGAAGCATGCAACTGCAAAATTACCAATTATTTCAGGGGGGCCAATCCACTTGCCGTAG 2247 0.4232 MQLQCMEESAESLRSRCFKFYKGSRKYTEGLGEAYDGDIAFATALENFGGGHNDPLFVTLGGPVMTKFSIALREISTNKELLRSQAEHMLNDRLLNMLNVDILDVKEARRRFEKASLVHDQAREKFMSLRKSTRIDIATVVEEELHNARSSFEESRFNLVSALHNVEAKKRFEFLEAVTGVMDAHLRYYRQGYQLLQELEPFIIEVLAYTQKARESYNEEQITLCERMLEYKKHVHQESMLSLNGPYISPGRDGNPVHPFSRISNTVVDAVTESAENGKIQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYFRKPWNGLHGSNQSSVHRTCATDNSAGILSRLLSSHYHGVMPDEKSVARHTVNLLTSTIKIDAEQSDLRFCFRIISPSKSYTLQAENALDQMDWTEKITGVIASLLSAQTLSDVSENGNGSSVNKLLLLQGCPDDDLALGGDSTSSEDFQKNKQGVKSEKPIDILRKVSGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDSAVLSMLHSLGNHFANSVWEELLHPSCTSQADESSDGSSKPPKKLFHARKPSYDDPISLKERFIHAKYAAKVFVSRITNNDCLLSTAQQMAESINANDKKAVYRHIVKSDVNVNAISGEAGFSSSVPSSTNDPNTSCDNTTQPVQDIPDGSTVLHLACLSCDAAMVELLLQYGADLNAIDSKGKTPLHYCTMMGKHATAKLPIISGGPIHLP* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00919 748 Pfam BAR domain of APPL family 2 220 IPR004148 GO:0005515|GO:0005737
Lapu9g00919 748 SMART arf_gap_3 473 617 IPR001164 GO:0005096
Lapu9g00919 748 SUPERFAMILY Ankyrin repeat 637 737 IPR036770 -
Lapu9g00919 748 ProSiteProfiles Ankyrin repeat region circular profile. 685 716 - -
Lapu9g00919 748 SUPERFAMILY BAR/IMD domain-like 2 304 IPR027267 -
Lapu9g00919 748 Gene3D - 618 741 IPR036770 -
Lapu9g00919 748 Gene3D Arfaptin homology (AH) domain/BAR domain 1 237 IPR027267 -
Lapu9g00919 748 ProSiteProfiles ARF GTPase-activating proteins domain profile. 473 617 IPR001164 GO:0005096
Lapu9g00919 748 ProSiteProfiles Ankyrin repeat profile. 685 717 IPR002110 GO:0005515
Lapu9g00919 748 SMART 5bar 2 205 IPR004148 GO:0005515|GO:0005737
Lapu9g00919 748 MobiDBLite consensus disorder prediction 658 679 - -
Lapu9g00919 748 CDD ArfGap 476 604 - -
Lapu9g00919 748 MobiDBLite consensus disorder prediction 566 585 - -
Lapu9g00919 748 Pfam PH domain 283 416 IPR001849 -
Lapu9g00919 748 ProSiteProfiles PH domain profile. 281 417 IPR001849 -
Lapu9g00919 748 Pfam Ankyrin repeats (many copies) 687 734 IPR002110 GO:0005515
Lapu9g00919 748 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 456 618 - -
Lapu9g00919 748 Coils Coil 105 125 - -
Lapu9g00919 748 Pfam Putative GTPase activating protein for Arf 476 609 IPR001164 GO:0005096
Lapu9g00919 748 ProSiteProfiles BAR domain profile. 1 212 IPR004148 GO:0005515|GO:0005737
Lapu9g00919 748 SMART ANK_2a 685 714 IPR002110 GO:0005515
Lapu9g00919 748 SMART ANK_2a 718 747 IPR002110 GO:0005515
Lapu9g00919 748 SUPERFAMILY ArfGap/RecO-like zinc finger 473 611 IPR037278 -
Lapu9g00919 748 CDD BAR_SFC_plant 2 202 IPR035670 -
Lapu9g00919 748 Gene3D Arf GTPase activating protein 455 617 IPR038508 -
Lapu9g00919 748 SUPERFAMILY PH domain-like 190 416 - -
Lapu9g00919 748 Gene3D - 274 432 IPR011993 -
Lapu9g00919 748 PANTHER CENTAURIN/ARF 2 737 IPR045258 GO:0005096
Lapu9g00919 748 SMART PH_update 282 419 IPR001849 -
Lapu9g00919 748 PRINTS HIV Rev interacting protein signature 485 504 IPR001164 GO:0005096
Lapu9g00919 748 PRINTS HIV Rev interacting protein signature 504 521 IPR001164 GO:0005096
Lapu9g00919 748 PRINTS HIV Rev interacting protein signature 527 548 IPR001164 GO:0005096
Lapu9g00919 748 CDD PH_ACAP 284 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00919 Lapu-Chr9 13908204 13915780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00919 467 615 C2H2 Transcription Factor Family AT4G21160 41.176 1.21e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00919 K12489 - gmx:100797073 1226.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00919 9 13908204 13915780 Lapu9g00919 9 13908204 13915780 ECH