Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00916 ATGCCTTCTGAAATAATGGAGAAGAGGGGTGTGTCTGCCTCATCCCACTTTTTGGATGACATTTCCTATGCTTCTGAGAAGAATATCGGATTACGGAAGCCAAAATCTATTCATGACCAGTTTCTACAGGGGAAGAGTGAAATGGCGGCATCACCTGGCAGTATTTTGAATACTTCATCCCCGCGAGCAACAAATGGAAAATCTGGCTTGCCAATGTCTCAGACTACTCTATCTGGGGAAATTACAGATGACCTACATTTTGGCAGAGAAGCAGGAACTGTAGAGATGCTGAAGGATTCCACCGAATCATTTAATTATAATAAGAGGTCATGGTCTAATGTGCATACGCAGCCAGCATCTAGCTCATATGGTCTAATTGGTAGCAAGATTGTCACCAGTGCTGCCTCACGTGAAAGTAGTCTATTTTCAAGCTCGCTGTCTGAGATGTTTAGCCAAAAGTTGAGGTTATTGGGGAATGGAGTGCTGTCTGGTCAACCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCGTTTAAATCTCTAGGAGAAATTGAGGCTGATACTATTGGAAATCTTCTTCCTGATGAAGATGACCTGTTTTCGGGAGTCACTGACGAGTTAGGATGCAGTACTCGTGCGAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGCGGAGGCATGGAATTGGAAGGAGATGAACATCTAATTTCTGGGAAGGGAACCGGTTTCGTGGATGAAGATCCTGATTACTTTGGGGTTTCTAAAGGAAAAATTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTTGAGGACTCCGAGCTTAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACTATATACACTGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTATTATGATCTAAGGGCAGCACAAAATGCAATGAAGGCACTTCAAAATAGGTCATTGAGATCTAGGAAACTGGATATACATTATTCAATTCCTAAGGGCAATGCTCCAGAGAAAGATATTGGCCATGGTACACTGATGATATCTGATCTTGATTCATCTGTTTTGAATGATGAACTTAAGCAGATTTTTGGGTTTTATGGAGAAATTAGAGATATCTATGAATATCCACAATTGGATCATGTCAAATTTATCGAATTTTATGATGTTCGAGCTGCAGAAGCTTCTCTACGTGCATTGAATGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAGCCCGGACTTCCCATGATTGCAACATGTCTGATGCAGCAGTCTAAGAAGGGACAAGATGAACCTGATCTTGGTCATAGTCTTAGTGACAACATTTCCTTGAGACATAAGGCAGGAGTATCATCTGGATTTATTACATCTGCTGGCAGCTTGGAAAATGGATATAATCAAGGATTTCATTCTGCAACACAGCTACCTGCTTTCATTGATAGCTCACTATTTAATATGAACTCTAACATTCACAAGACCACAAGAGGGGCATCTACTGGAAAAGTGTCTGGTGTTTTTGAGACCAGTAACACTATTGACGCAATGAAATTTGCATCCGTTTCGAGGTTCCATCCTCATTCTTTACCTGAATATCATGATAGTTTAGCTAATGGCAGTCCTTACAACTTTTCAAGTACCATTAACATGGCTGCCAATATTGGAACTGGATCAACGGAATCATCTGACAGCAGGCACATTCAGGGAATAAACTCAACTGGGAACCTTGCAGAGTTTAATGCAGGAGGAAATGGCAACCGCCCCAATCATGGACTTTATCATATGTGGAATGGCTCCAACCTGCATCAACAACCTCCTTCAAATACCATGCTTTGGCAGAAAACACCATCCTTTGTTAATGGTGCTGGTTCTCCGTGTCTTCCACAGATACCCAGCTTTCCTAGAACACCTCCCCATGTGCTTAGAGCATCACATATAGACCATCAAGTGGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCGCCTGATGGTTCTGGTTTTAGATTGGGTTCTGTAGGAAGTCCTGGCTTTCATGGTAGCTGGCAGATGCATCCTCCTGCTTCTCACAACATATTTTCTCATGTTAGTGGGAATGGTACAGAATTGACGTCAAATGCTGGGCAGGGCTCTCCTAAGCAGTTATCACATGTTTTACCTGGGAGACTTCCCATGAATTTGGTTTCTAAATTTGATTCTACCAATGAACGAATGAGAAACCTCTATCCTCGTAGAAGTGAACCAAACACTAACAACAATGCAGATAAAAAACAGTATGAACTTGACCTAGGCCGCATATTGCGTGGGGATGACAACCGAACAACGCTCATGATAAAAAATATTCCCAATAAGTATACTTCAAAGATGCTTCTTGCTGCCATTGATGAACAATGTCGAGGAACATATGATTTTCTATATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATTATTCCATTCCACAAGGCTTTTAATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTACTCGCCTATGCCCGAATTCAAGGAAAAGCTGCTCTTATTGCTCATTTTCAGAATTCAAGCTTGATGAATGAAGATAAACGTTGCCGCCCTATTCTTTTCCATACAGATGGCCCGAATGCTGGCGATCCGGAGCCTTTCCCCTTGGGTAACAATATTAGAGTGAGGCCTGGAAAATCTCGCGCTAATGGTAATGAGGAGAATCGCAGCCAAGGGAATCCTTCATCTTTGGCAAGTGGAGAAGAGTCTGGGAATGGAATGGAATCATCTTCGATCTCTTCAAAAAACTCTGACTGA 2913 0.4174 MPSEIMEKRGVSASSHFLDDISYASEKNIGLRKPKSIHDQFLQGKSEMAASPGSILNTSSPRATNGKSGLPMSQTTLSGEITDDLHFGREAGTVEMLKDSTESFNYNKRSWSNVHTQPASSSYGLIGSKIVTSAASRESSLFSSSLSEMFSQKLRLLGNGVLSGQPITVGSLPEEEPFKSLGEIEADTIGNLLPDEDDLFSGVTDELGCSTRARMNDDFEDFDLFSSSGGMELEGDEHLISGKGTGFVDEDPDYFGVSKGKIPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMKALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLNDELKQIFGFYGEIRDIYEYPQLDHVKFIEFYDVRAAEASLRALNGICFAGKHIKLEPGLPMIATCLMQQSKKGQDEPDLGHSLSDNISLRHKAGVSSGFITSAGSLENGYNQGFHSATQLPAFIDSSLFNMNSNIHKTTRGASTGKVSGVFETSNTIDAMKFASVSRFHPHSLPEYHDSLANGSPYNFSSTINMAANIGTGSTESSDSRHIQGINSTGNLAEFNAGGNGNRPNHGLYHMWNGSNLHQQPPSNTMLWQKTPSFVNGAGSPCLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDGSGFRLGSVGSPGFHGSWQMHPPASHNIFSHVSGNGTELTSNAGQGSPKQLSHVLPGRLPMNLVSKFDSTNERMRNLYPRRSEPNTNNNADKKQYELDLGRILRGDDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHKAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKSRANGNEENRSQGNPSSLASGEESGNGMESSSISSKNSD* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00916 970 MobiDBLite consensus disorder prediction 905 970 - -
Lapu9g00916 970 CDD RRM1_MEI2_like 269 344 IPR034453 -
Lapu9g00916 970 MobiDBLite consensus disorder prediction 50 72 - -
Lapu9g00916 970 SMART rrm1_1 356 424 IPR000504 GO:0003723
Lapu9g00916 970 SMART rrm1_1 271 339 IPR000504 GO:0003723
Lapu9g00916 970 SMART rrm1_1 796 874 IPR000504 GO:0003723
Lapu9g00916 970 MobiDBLite consensus disorder prediction 720 740 - -
Lapu9g00916 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Lapu9g00916 970 Gene3D - 264 353 IPR012677 -
Lapu9g00916 970 FunFam MEI2-like protein 5 isoform 2 259 353 - -
Lapu9g00916 970 Pfam RNA recognition motif 2 794 890 IPR007201 -
Lapu9g00916 970 CDD RRM3_MEI2_like 797 882 IPR034454 -
Lapu9g00916 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Lapu9g00916 970 PANTHER RNA RECOGNITION MOTIF-CONTAINING 46 965 - -
Lapu9g00916 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Lapu9g00916 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Lapu9g00916 970 MobiDBLite consensus disorder prediction 48 72 - -
Lapu9g00916 970 Gene3D - 354 455 IPR012677 -
Lapu9g00916 970 SUPERFAMILY RNA-binding domain, RBD 796 881 IPR035979 GO:0003676
Lapu9g00916 970 MobiDBLite consensus disorder prediction 720 734 - -
Lapu9g00916 970 FunFam Protein MEI2-like 1 354 448 - -
Lapu9g00916 970 MobiDBLite consensus disorder prediction 936 970 - -
Lapu9g00916 970 SUPERFAMILY RNA-binding domain, RBD 267 424 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00916 Lapu-Chr9 13751634 13760724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00916 265 421 Eukaryotic Initiation Factors Gene Family AT3G16380 25.843 3.79e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00916 - - gmx:100797616 1728.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00916 9 13751634 13760724 Lapu9g00916 9 13751634 13760724 ECH