Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00913 ATGGACAGAAGATCACATTCTTCTGAAAGAGAAGAGGAACACGATTTGTTCCCAATATACTCCGAAAGGTCACAGCAAGACATGTCAGCCATGGTCTCTGCTCTCACACAAGTCATGGGAGGCTCCAACGATCATTCTCTTCAAGAAGACCTTTTAACTTCTTCCCACAACACCTCATCCCAGAATAATAATGAACAATCCCAACTGCCACAACAAGATCAAGGGAGTGGAAGAAGAAGACACTATAGAGGAGTGAGGCAGCGTCCATGGGGAAAATGGGCTGCAGAGATTCGTGATCCGAAGAAGGCAGCGAGGGTATGGCTTGGAACTTTCGAAACTGCAGAAGCTGCAGCTCTTGCTTACGATGAAGCTGCTCTGAGATTCAAAGGAAGCAAAGCCAAGCTCAATTTCCCTGAGAGGGTTCAAGGAACTGGCGAATTTGGTTACCTCACAAATCAACACCTCTCATCAACCACCACTAGGAGTGGCCAAGCTTCCAACCCTGTTGCTCCACACTTCACTCAAGAAACGTATTCAGCAACTCACTATCACTATCCACAACAAATCATGGGTGCTGGTGGGAGTAGCAGCTTCAATAGCCAAGATATGCTTCGTTTCTATGGGGGAGACATGCTTGTTTCATCTCAGCCAGCTGCATCCTCGTCTTCTTCTACTGGTCTCTCTCAGCAGCAAGAAGAGTTTATGAGATTTTCGACGCAGTTTGGAGGTTCTTCTTCTGAGCCTCCTAGGAATTGGAGGGGGGATGGATATTGA 774 0.4703 MDRRSHSSEREEEHDLFPIYSERSQQDMSAMVSALTQVMGGSNDHSLQEDLLTSSHNTSSQNNNEQSQLPQQDQGSGRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTGEFGYLTNQHLSSTTTRSGQASNPVAPHFTQETYSATHYHYPQQIMGAGGSSSFNSQDMLRFYGGDMLVSSQPAASSSSSTGLSQQQEEFMRFSTQFGGSSSEPPRNWRGDGY* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00913 257 SUPERFAMILY DNA-binding domain 81 139 IPR016177 GO:0003677
Lapu9g00913 257 Pfam AP2 domain 81 130 IPR001471 GO:0003700|GO:0006355
Lapu9g00913 257 MobiDBLite consensus disorder prediction 1 20 - -
Lapu9g00913 257 PANTHER DNA-BINDING DOMAIN 42 217 IPR044808 GO:0003700|GO:0009873
Lapu9g00913 257 SMART rav1_2 81 144 IPR001471 GO:0003700|GO:0006355
Lapu9g00913 257 MobiDBLite consensus disorder prediction 22 75 - -
Lapu9g00913 257 CDD AP2 81 139 IPR001471 GO:0003700|GO:0006355
Lapu9g00913 257 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Lapu9g00913 257 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Lapu9g00913 257 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700|GO:0006355
Lapu9g00913 257 Gene3D AP2/ERF domain 80 140 IPR036955 GO:0003700|GO:0006355
Lapu9g00913 257 MobiDBLite consensus disorder prediction 1 87 - -
Lapu9g00913 257 MobiDBLite consensus disorder prediction 214 257 - -
Lapu9g00913 257 MobiDBLite consensus disorder prediction 214 247 - -
Lapu9g00913 257 FunFam Ethylene-responsive transcription factor 2 80 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00913 Lapu-Chr9 13696490 13698526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00913 15 153 AP2-EREBP Transcription Factor Family AT5G61890 66.207 3.09e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu9g00913 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00913 - - gmx:100799190 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00913 9 13696490 13698526 Lapu9g00913 9 13696490 13698526 ECH
Lapu3g03507 3 58409382 58412914 Lapu9g00913 9 13696490 13698526 ECH
Lapu3g03507 3 58409382 58412914 Lapu9g00913 9 13696490 13698526 PCT