Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00882 ATGGGTAGATCTCCTTGTTGTGAGAAAGAACACACAAACAAAGGAGCTTGGACCAAAGAAGAAGACGAACGCCTCATCAACTACATCAAACTCCATGGTGAAGGTTGTTGGAGATCCCTCCCCAAAGCTGCTGGCTTGCTCAGATGTGGCAAGAGTTGCAGACTCAGATGGATAAATTACCTCAGACCCGATCTAAAGAGAGGCAACTTCACTGAAGATGAAGACGAGCTCATCATTAACCTCCACAGCTTACTTGGAAACAAATGGTCTTTGATTGCTGCAAGGTTACCCGGAAGAACCGATAACGAAATAAAAAACTATTGGAACACTCACATCAAGCGGAAACTCTACAGCCGCGGAATCGACCCGCAAACCCATCGACCGCTCAACGCCGCCTCCGGCACTCCGGCAACCGCCTCAGTTCCGCCTCCCTCCGCCGCCTCGGTCCCTGTGGCAACGTCTTCATCCAACAAAAGAATAAACAGCGACAGCATTAGCAGCTCCAACACCATCACCCATGATGTTGTTATCACCAACAACAATAACAACAGCAACGGTTTTCAGTTGGTGAGTAGCAGTGCTTATGCCAACACCACGACAAAGGTTGGAACCGATGAAGATTCTAACAGCAGCAGCGGCGTTACCGTGGAAGAATCCTTCCCTCACCATCAACTCAACTTGGACCTTTCCATTGGTCTTCCCTCTCACCAAGTTTCTTCTTCGGTGAACCCAGAAAAGTTGAAAGCTCAAGACCATGATCAAAAACCGCAAGTGTTGTACAAGTGGTACGGGAACATTACTGGCCAAGGTGTTTGTCTTTGTTACAGTCTAGGGCTTCAAAGCGACCAAGCTTGTTATTGCAAAGGCGTGGGTGCTACTGCTACTACTACCGCGGTTACTACAACTGCCACAGATAGTAATCTATATAGATTTTACAGAACCATGAATATTTAG 954 0.4738 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEDEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNAASGTPATASVPPPSAASVPVATSSSNKRINSDSISSSNTITHDVVITNNNNNSNGFQLVSSSAYANTTTKVGTDEDSNSSSGVTVEESFPHHQLNLDLSIGLPSHQVSSSVNPEKLKAQDHDQKPQVLYKWYGNITGQGVCLCYSLGLQSDQACYCKGVGATATTTAVTTTATDSNLYRFYRTMNI* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00882 317 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu9g00882 317 CDD SANT 69 112 IPR001005 -
Lapu9g00882 317 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 227 - -
Lapu9g00882 317 CDD SANT 16 61 IPR001005 -
Lapu9g00882 317 MobiDBLite consensus disorder prediction 128 165 - -
Lapu9g00882 317 Gene3D - 68 133 - -
Lapu9g00882 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu9g00882 317 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu9g00882 317 FunFam Myb transcription factor 68 137 - -
Lapu9g00882 317 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Lapu9g00882 317 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lapu9g00882 317 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu9g00882 317 MobiDBLite consensus disorder prediction 121 165 - -
Lapu9g00882 317 FunFam MYB-related transcription factor 13 66 - -
Lapu9g00882 317 SMART sant 13 63 IPR001005 -
Lapu9g00882 317 SMART sant 66 114 IPR001005 -
Lapu9g00882 317 Gene3D - 14 66 - -
Lapu9g00882 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00882 Lapu-Chr9 13191227 13192987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00882 1 235 MYB Transcription Factor Family AT4G09460 57.447 3.76e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu9g00882 Myb_DNA-binding 4.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00882 K09422 - gmx:100808083 468.774