Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00872 ATGCCGCTTTTGAGGAGAAAGCCTTTTGCCCTGGCTGAGCCACCTAATGATTTGGAGCCATGCGAGAGTCTTTTTCAAATTCGATTTACTAAAGAAATATTTCGAGATTATGAAACAAGTGATTATTTGAACCGTTTAAATCAATACCGCCAGAGGGTTTGGACGTGCAAAGTAACTGGAAAAACTGGCTTGACTTATGAAGAGGCTCTGGTGTCGGAGAAGCATGCTATTGCGAAAGTTCAACAGATTCCGGAAGAATTAATGGCACCTGCACTTAGGATTATTCAGTATAGTATGCTCCCTTTGAAGGATCTTGTTGATTCTATTGCTGAAAAGTTGAAGGAGCAGTTGTTTGTGGGCTCTCATTTGTACGGAAAAAAGAATGACAGAGTGCATCCTTGCAAAATATTGAAAGTGATGCAGGAAGATGCTGAAAATGTCAGCTATGTGGTGGCTTGGCTTGATGAAAGCAATAATGTTATTGGAAGAGCAGAAGTCAGTTCTCAAGATTTGGTGCAGAAGAAACCACCTTTTAGTAGAAATATTTTGAAGTCATTTGTCCGTGAATGCACATATCGGAATGCTCCTTGGGTTTTACACGATAAAATTGCAAAAAAACATGGAATCTCAACTGACATTCCAGAGGAGTTAAGAGGAAAGGTTTCCTTTAACAATGGACTTGTGGTCTTCACCAAAAAAAGAAAGCATGAGGAAGAGTCAATCAAATATCCAATTGATGATCTATTAGTGAAGCCTAGTCCAGATGATCCTGTTCTCAGTAGTCGTCCTTCTCCATCAAGAGACTTTAATGTTCCAATGTATTGTGTAGGGGATCTCTTAATGGTTTGGGATTTTTTTATGTCTTTTGGTAAACTGTTACGATTGTCTCCTTATTCTCTCAAAGATTTTGAAAATGCAATCAGTCACAAGGATAGCAATGCAGTTCTCCTAGTGGAATCTCATGCTGTACTCTTTCGTGTGCTCATCGAAGGTGATGATGAATACTATGCAGCTGTTCAAGACAAATTACCGAAGAAGATTACAATGATTAGTTGGAAAGATTATTTATGTGAGTTTTTAGAAATGATCAAAATTCCCAAGCTGCGGCAGTATGAAGCAACAATTAAACGGGGACATTATGGTTATGTAGATGTCGATGCTAAATTAGAAATCTTTCGTGAATTAGTCAATCGAGCCCTTGATACTGCTCCTGTCAGGGAAAATTTGGATGAGATTATTAAACAAAGGCGGGTACTGGGGGCTGCTAAAAGGGAAGAAGCTATTGAAGCTTCTGCAAAGAGAAGAAAAGTAAAGGAGCAGTTGAAAGCTGATTCTGGAAGCCACTGTGGTGAGAATGGGCATCATATTGATCAGGATGCCACTATGTTAACAGATAATAATCACAGAATACAGAATGGTAGTATTGGAAAGAATAGAAACAGAGAGATAGAATCAACTAGGGAAAAGGACGCGTTGAATAGTGGTATGAAGCATTCAAACCTTGCTTCAAAAATGTCAGCTGAAAAGTTTGATTCTGAGCTGAATCGATCAGCAGAATTCGGAAAAGTATGCAGAAAGGAATCACCGAAACACCCAGAGGGTGATGAGGATCAATCAGAGAAAAGCTACAAACAAAGGAGGGAATATTTTGATCGGGAGATACAGAAATGGTGTATTCGTACAAGTTTCCTAGGTATGGACAGATATTATAATAGGTATTGGTGGTTTTACCGTGATGGAAGGATATTTGTTGAAAGTCCTGAATCCAAGGAGTGGGGATACTACAGTAGCAAAGGAGAGCTTGATGGATTGACGAGTTCACTGAATTGCAAAGGCGAGAGGGAAAGGGCACTGCTAAAACAACTGCAAAAATATTATAGTAGAATATGCTCAGAACTGCAGAAAAATTCAAAGGATTGGATGCATAAGATTACCCTGGATGACTCTGTGGTCAGAAGGTCTACTCGTGTTCGCGCTCCACCTAGGAAAAATCCTGCCAAAGCTTTCCTCAGATATGTAAACAAGTGGAAAGAAGAGTAA 2040 0.3941 MPLLRRKPFALAEPPNDLEPCESLFQIRFTKEIFRDYETSDYLNRLNQYRQRVWTCKVTGKTGLTYEEALVSEKHAIAKVQQIPEELMAPALRIIQYSMLPLKDLVDSIAEKLKEQLFVGSHLYGKKNDRVHPCKILKVMQEDAENVSYVVAWLDESNNVIGRAEVSSQDLVQKKPPFSRNILKSFVRECTYRNAPWVLHDKIAKKHGISTDIPEELRGKVSFNNGLVVFTKKRKHEEESIKYPIDDLLVKPSPDDPVLSSRPSPSRDFNVPMYCVGDLLMVWDFFMSFGKLLRLSPYSLKDFENAISHKDSNAVLLVESHAVLFRVLIEGDDEYYAAVQDKLPKKITMISWKDYLCEFLEMIKIPKLRQYEATIKRGHYGYVDVDAKLEIFRELVNRALDTAPVRENLDEIIKQRRVLGAAKREEAIEASAKRRKVKEQLKADSGSHCGENGHHIDQDATMLTDNNHRIQNGSIGKNRNREIESTREKDALNSGMKHSNLASKMSAEKFDSELNRSAEFGKVCRKESPKHPEGDEDQSEKSYKQRREYFDREIQKWCIRTSFLGMDRYYNRYWWFYRDGRIFVESPESKEWGYYSSKGELDGLTSSLNCKGERERALLKQLQKYYSRICSELQKNSKDWMHKITLDDSVVRRSTRVRAPPRKNPAKAFLRYVNKWKEE* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00872 679 MobiDBLite consensus disorder prediction 521 543 - -
Lapu9g00872 679 MobiDBLite consensus disorder prediction 480 494 - -
Lapu9g00872 679 SMART testlast3 273 334 IPR018501 -
Lapu9g00872 679 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 559 625 IPR028941 -
Lapu9g00872 679 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 122 IPR013136 -
Lapu9g00872 679 ProSiteProfiles DDT domain profile. 273 334 IPR018501 -
Lapu9g00872 679 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 374 407 IPR028942 -
Lapu9g00872 679 ProSiteProfiles WAC domain profile. 22 130 IPR013136 -
Lapu9g00872 679 Pfam DDT domain 275 329 IPR018501 -
Lapu9g00872 679 MobiDBLite consensus disorder prediction 470 500 - -
Lapu9g00872 679 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 234 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00872 Lapu-Chr9 13101356 13105966 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lapu9g00872 WAC_Acf1_DNA_bd 3.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00872 - - gmx:100784607 1075.08