Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00863 ATGAACGAAGCCCAAATTGAAATTTCCATTCCTCACCTGTTCAGATGCCCCATCAGTTTGGACTTGTTCGAAGATCCTGTAACTTTGTCCACGGGCCAAACCTATGACAGATCAAGCATAGAGAAATGGTTCTCTGCTGGAAATCTCACATGCCCTGTAACAATGCAGAAGCTTCGTGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTCCAATTGGGTCCCCAATTTGGTAACTCTGCTACTATTGATTATTTAGCCGCATTAAAGCACACCCTTGAATCTCCCAAATTGGAAAACAAGCTCCAAGCACTAGAGAAAATTAGAGTTCTCTCTGATGAGTATTGCTCCTTCAGAAAATCTTGTTTCCATCAACTGAGTTTCTTGCCCTTACTTTTGGAACTTGTTTTTGGCACTCAGTTCACAAAATGTCACATGAAGTTCACGGAGCTAGCACTTTCCTGCATTATAAAGTTGTTACCTCTTGTGAGTTTAGAGCCTCTAAATGTGATCAAAGATGAGTCTAAGTTAGCAACGTTCTTGCTACTATTTGAAAAGGGAACTAGCTCGGTTAAGACTAGTCTTTGCCATCTTATAGATTCAACAGCATCACCACAAACTGAAGAGGTATGTCACATGCTTGGACACTCTCAAAAACTAGTGCATGAAATTGTCGTACTTGTTCGCCAAGGTTGTGAGGTTTCTAAGGTTGCAATTAAGGCCATGTTAGCATTATGTTCCTTGCAATCTAACCGAGACAATTTAGTGAGGGCAGGAGCAATTGATGGGGTCATAATATACATTTCAGTTTGTGAAACAAGGCAGAAGAACTTGGCTCCATTTGCGATGGCAATAATAAAGAACCTTCTGGTGCTAGAGAGTGGTAAAGAGGCACTGGTGAATCACCCTAATGGGGTTCAAACTTTGGTGAAGATGGTTTTCAGGGTGTGTAATCAAGAGTGTAGTGAGAGTGCTGTTGGGATACTTTCAATTGTTTGCCGTGATTTTGGGCGTGCAAGAGAGGAAGCAATCGGTGCTGGAGTTTTGACTCAGTTGCTGTTTCTTCTCCAGAGTCAGTGTGGCATCAAAACTAAAACAAAAGCAAGAATGCTGCTCAAGTTGCTAAGATCAAAATGGATTGAGGAACCAAAGCAGGTGTAG 1179 0.4215 MNEAQIEISIPHLFRCPISLDLFEDPVTLSTGQTYDRSSIEKWFSAGNLTCPVTMQKLRDPSIVPNHTLRHLIDQWLQLGPQFGNSATIDYLAALKHTLESPKLENKLQALEKIRVLSDEYCSFRKSCFHQLSFLPLLLELVFGTQFTKCHMKFTELALSCIIKLLPLVSLEPLNVIKDESKLATFLLLFEKGTSSVKTSLCHLIDSTASPQTEEVCHMLGHSQKLVHEIVVLVRQGCEVSKVAIKAMLALCSLQSNRDNLVRAGAIDGVIIYISVCETRQKNLAPFAMAIIKNLLVLESGKEALVNHPNGVQTLVKMVFRVCNQECSESAVGILSIVCRDFGRAREEAIGAGVLTQLLFLLQSQCGIKTKTKARMLLKLLRSKWIEEPKQV* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00863 392 CDD RING-Ubox_PUB 11 60 IPR045210 -
Lapu9g00863 392 PANTHER WDSAM1 PROTEIN 7 389 IPR045185 GO:0061630
Lapu9g00863 392 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lapu9g00863 392 FunFam RING-type E3 ubiquitin transferase 10 81 - -
Lapu9g00863 392 SUPERFAMILY RING/U-box 6 78 - -
Lapu9g00863 392 SUPERFAMILY ARM repeat 238 381 IPR016024 -
Lapu9g00863 392 Gene3D - 180 389 IPR011989 -
Lapu9g00863 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Lapu9g00863 392 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lapu9g00863 392 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00863 Lapu-Chr9 12964389 12966287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00863 5 388 U-box Gene Family AT1G49780 29.877 8.22e-43 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00863 - - gmx:100815247 697.967