Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00851 ATGGGAGATGAAAGCCACACCAATTTGCCAAATGGGTTCATCACAGGAAGCCCTGAAAGCCCTTGCTTAAAGCCATGCAATAACACCACCACCACCACTAACCATCACAACAACAAAGAACAAGATCGCTTTCTCCCTATCGCCAACGTCGGAAGAATCATGAAAAAGGCCATCCCTGGCAATGGAAAAATCTCAAAGGATGCAAAAGAAACAGTTCAAGAGTGTGTATCTGAGTTCATCAGCTTTGTCACAGGCGAAGCCTCAGACAAATGCCAAAGGGAAAAGAGAAAAACCATCAATGGAGATGATATCATTTGGGCCATCACTACCCTAGGATTTGAGGACTATGTGGACCCTTTAAAATCCTATCTCCAAAAATATAAAGAGATTGAAGGAGAGAAGCTTAACATTCCTAAACAACAACGTTCTGAACAAAGGCTACATCAACAGCAGCATTCTCATCAAGACCAAAATAACAATCTACCTCTAAGTAGTGTATATTCTCCAACTCTCATTTCTCAGCCATCTTATGTTGCCACGGATCAACTATTTTCCCTACCATTCTCCCCAAATTCGATTCAGAAACAGTTACAGCCGCAAGACCAAATCGATTCTGTGGGGCAATGGTAA 630 0.4206 MGDESHTNLPNGFITGSPESPCLKPCNNTTTTTNHHNNKEQDRFLPIANVGRIMKKAIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYKEIEGEKLNIPKQQRSEQRLHQQQHSHQDQNNNLPLSSVYSPTLISQPSYVATDQLFSLPFSPNSIQKQLQPQDQIDSVGQW* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00851 209 MobiDBLite consensus disorder prediction 1 37 - -
Lapu9g00851 209 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 28 160 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lapu9g00851 209 MobiDBLite consensus disorder prediction 140 165 - -
Lapu9g00851 209 MobiDBLite consensus disorder prediction 8 35 - -
Lapu9g00851 209 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 44 108 IPR003958 -
Lapu9g00851 209 ProSitePatterns NF-YB/HAP3 subunit signature. 75 91 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lapu9g00851 209 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Lapu9g00851 209 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Lapu9g00851 209 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Lapu9g00851 209 FunFam Nuclear transcription factor Y subunit B-3 33 159 - -
Lapu9g00851 209 SUPERFAMILY Histone-fold 41 155 IPR009072 GO:0046982
Lapu9g00851 209 Gene3D Histone, subunit A 31 163 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00851 Lapu-Chr9 12769846 12773481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00851 39 209 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.835 2.44e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lapu9g00851 CBFD_NFYB_HMF 6.1e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00851 K08065 - gmx:100778216 304.293