Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00841 ATGAAAACCACTCTACTCTCTCTGCTTTTCTTCCTCTGCACTCCTACCCTCATTTTCTCTTCACCACTTCAAAACCCTCACGAGGTCGTGCAAGAGGTCAACAGGAAAATCAACGCCTCCATGGCTAGGCCTAGGAGGAGCTTGGGCTACCTGTCATGCGGCAGCGGCAACCCCATTGACGACTGTTGGCGGTGCGACCCGAATTGGGAGAAGAACCGGCAAAGGCTAGCGGACTGCGCAATCGGGTTCGGCAAGAACGCCATCGGCGGAAGGGACGGGAAGATCTACGTGGTGGACGACGAGGGCGACGACGACCCGGTGAACCCGAAGCCGGGGACGCTCCGCCACGCCGTGATCCAAGACGAGCCCCTCTGGATCATCTTCGCGCGCGACATGGTGATCCAGCTGAAGGAGGAGCTTCTGATGAACTCCTTCAAGACCATCGACGGCCGCGGCGCCAGCGTGCACATCGCCGGCGGCCCCTGCATCACCGTGCAGTACGTGACGAACGTGATAATCCACGGCATCCACGTGCACGACTGCAAGCAGGGAGGGAACGCTATGGTGCGCGCCTCCCCACGGCACTACGGGTGGAGAACCGTGTCGGACGGCGATGGTGTGTCGATCTTCGGAGGAAGCCACGTGTGGGTGGACCATTGCTCGTTGTCGAACTGCAACGATGGGTTGATCGACGCCATCCATGGGTCCACTGCCATCACCATCTCGAACAATTACATGACGCATCATGACAAAGTCATGCTCTTAGGTCACAGTGACTCTTACACTCAGGACAAGGACATGCAGGTCACTATTGCTTTCAACCACTTTGGTGAAGGCCTTGTTCAGAGGATGCCAAGGTGTAGGCTTGGGTATTTCCATGTGGTGAACAATGATTATACACACTGGGAAATGTATGCCATTGGGGGCAGTGCTAATCCAACCATCAACAGCCAAGGCAACAGATTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAACGTGAAGATGCGGGAGAGAGTGAATGGCAGAGTTGGAATTGGAGATCAGAAGGGGACTTGTTAGTAAACGGTGCATTTTTCACTGCATCCGGTGCTGGAGCCTCCTCTAGCTATGCAAGGGCTTCTAGCCTAAGTGCTAGACCATCTTCACTTGTTGCTTCCATTACAACAGGTGCTGGTGCACTCACCTGCAAGAAAGGTTCTCCTTGCTGA 1218 0.5493 MKTTLLSLLFFLCTPTLIFSSPLQNPHEVVQEVNRKINASMARPRRSLGYLSCGSGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVDDEGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIQLKEELLMNSFKTIDGRGASVHIAGGPCITVQYVTNVIIHGIHVHDCKQGGNAMVRASPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKREDAGESEWQSWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVASITTGAGALTCKKGSPC* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00841 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Lapu9g00841 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Lapu9g00841 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Lapu9g00841 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Lapu9g00841 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Lapu9g00841 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Lapu9g00841 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Lapu9g00841 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Lapu9g00841 405 PANTHER PECTATE LYASE 18-RELATED 24 403 IPR045032 GO:0030570
Lapu9g00841 405 SMART amb_all 131 328 IPR002022 -
Lapu9g00841 405 Gene3D - 56 398 IPR012334 -
Lapu9g00841 405 FunFam Pectate lyase 56 398 - -
Lapu9g00841 405 SUPERFAMILY Pectin lyase-like 47 399 IPR011050 -
Lapu9g00841 405 Pfam Pectate lyase 141 322 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00841 Lapu-Chr9 12525161 12527754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00841 6 405 Polysaccharide Lyase AT5G63180 79.455 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00841 K01728 - gmx:100814679 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00841 9 12525161 12527754 Lapu9g00841 9 12525161 12527754 ECH
Lapu3g01190 3 12826006 12827734 Lapu9g00841 9 12525161 12527754 ECH
Lapu9g00841 9 12525161 12527754 Lapu3g01190 3 12826006 12827734 ECH
Lapu3g01190 3 12826006 12827734 Lapu9g00841 9 12525161 12527754 PCT