Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00840 ATGATGGAAGGGCGGCGGCATTCAGTTGATATTCCAATTTCTAAAACTCTTGTGGCACTGAGGAGAGTCAGGTCACTGAGGGACCCGTCAACTAATTCTATGAGCAAACTCTCTTCTTTGGTTGATAATGTGCACTGGGAAAACGGTTCTGCTAATGACATTTCCCTGAGGTTTTCTGATGCTGCTCGGCCATGTGATTCTGATGATAATGCTGCTCTCAGATCAAGAAATTTAGGTTTCAAGGGACAAAGGGAGCAGAATGATGCCGATTCTGTATTCAACTCAATGTTGAAGCCTAGTGGGATTTCTTGTCAGGGTGTCCAACAAGATGGTGAACTAGTTCACTCTAAGCGTAATCTTCAATGCATTTCTGGAAACAAATCACCAGGTGAAAGCTGCGGTAGCAACCATGGGGGTAAAGGATTGGACTTGGCTTGTATTGTGCTTCCAAGTAATAATGATTTCAAGGATGGGGATTCATGTTATATAGCAACTGCTAGATCATCTCAATTAGGGAGAATAGATTGCTCTAAGTCAGCAAAAAGGTCTCTGCGCAAGAATCAAGTAAAACCGTCAGAGTTAGTAGGAAGTATTGATAGAAATGTTAGTCCATACCCTTCTGGTTACGATGTTTTCTCACCCTATAGTGGTTCAGTAGGTATAAATCAAGATATTGATGGTTTAGATAATAATGATAATGGGTGTGGAATAAGCTGCTGTTGGTCAAAGTCACCAAGATTTAGAGAATCAAATCTATATGGTGAGATAGAAGACCGTCCTTTGATATCTCACCGTGTTGACGAGTCAGATCTTCGTGCACACAGAAGCATGAGACACAATGGTGGCGGGATTAGTCCGAATTTGGAAACTCCTAGAAGTTTGTCCATGAAATTTAGGCCTAAATCATTTAGTGATTTGGTGGGACAAAATGTGGTAGTAAGGTCTCTTCTGGGGGCTATCTCCAGAGGAAGGATAACATCATTTTATCTCTTCTATGGTCCACGTGGCACCGGCAAAACATCTGCCTCTAGGATATTTGCTGCTGCACTGAATTGCCTTTCTTTTGAGGAGCAGAGGCCATGTGGCCAATGCAGAGAATGTATTATTTTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCTGTGAGAATCAATCGCAGTGACCAGGTTAAATCCCTTGTTAAGAGCGCAACCATCCCTCCAGTGTCCTCACGTTTCAAGGTTTTCATTATTGATGAGTGCCAGCTATTGAACGGGGAGACGTGGGCAAGCATTTCAAATAGCCTAGAGAACCTTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTGGAAAAGATTCCTCGTAGTGTAGTTTCCCGGGCTCAGAGGTATCACTTTCCAAAGGTTAAAGATGCTGACATTGTATACAGATTACAAAATATTTGCGCCGAAGAAGGTCTTGATTTTGAACAGGATGCTTTGGACTTCATTGCTGCAAAATCATGTGGGTCTGTTAGAGATGCAGAAATGATGCTTGATCAGATGAGTTTGCTTGGTAAAAAGATCAATATCTCTTTAGCTTATGAGCTTACTGGGATCGTTTCTGATGATGAATTACTTGATTTGCTGGATCTAGCTTTTTCATCCGACACTTCAAATACAGTCATTAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCAACTTGTATCACAACTGGCAAATCTCATTATGGACATACTTGCAGGGAAATGTGAAGATGGTGGTTCAGAAGTCAGAAGTAGATTTTATAGGAAATATACCTCGGAAGCTGATCTGCAGAAACTAAACAATGCATTGAAAATACTTTCTGAAACTGAGAAACAGTTAAGAATTTCGAAGAATCAAACAACATGGTTCACCGTAGCTCTCCTACAGTTAAGCTCTGTAGATTATCAATCTGTGGATGCAAATGATACCAAATTTAGTCTTCGAGGTGCATGCAATGGAGGTCAGCTTAACTTTTTTCCTTGGCTTGTTACATTATTTTTCAATTCCTTTTCTCCTTGGTGTGTTGGATGCGATTGGCAGAATGGGGTGATTTTGTCAGGCCTGTGTGCTACCAAGTCATACAGATTGGGAGTGCAGGAGGATCACAAAGGAACATTGGATTCCATTTGGTATAAAGCTACTGAGATGTGTCATTCTAGTCAGCTCAAAACTTTTCTCAGGAAGAAGGGGAAGTTGTCGTCACTTCATGTTGATCGCAGTACAGCTTGTCTTGCTATTGCTGAGTTGGAGTTCCACCACAACCACCATGTATCCAAGGCCGAGAAGTCATGGAAAATTATTGCAAGCTCCTTGCAGATCATATTGGGTTGCAATGTGGAGTTGAGGATCACTTATACACCTTGTGCTTCTGAATCCAAGTATGCCAAACTGAAGAGGTCATCTTTCAGTATCTTCACTTGTTCCCGCAGAAATCGGCAACAGAAGTCACTATCATCTAATGAACAAGGAAGTGAATCAGATTATGCTGATCACACCTCTGAAAATCCCATGATGAAGGACAAAACTTCTACCTCTGATTGTGGAATGGATGCTGTGACAGCTTTGAGGAGTTGTGAAGGGAATTTGCTGAGCTCAGGAGAAAGATTTTTGAATAGATCATTTCAAGAGAGTATGAGGACTTCATGTGCCGAAGTGGATTATTCTAAGGAAAAGGGATGCAACGGTGCTCATCCAGATCCATCAATACTCGATTCAGATAATGATCACTTTAACTGTTTTCCTAAAACCCTTTGGCTTCAAAAGAAGTTCCGTTCTTCATATTCATCCAACAAGTTGACTTTTCAAGGCATTCAACAACAGAAAGATTTTGTTTTATCTGTCCCGAAGTGTACATGTTCTGGGACATATACCTATGGTAATGAACCCTGCATTTTTTCCGGTAGTTGTAAGAACTGCACCAAAGCCTCTTAG 2958 0.4114 MMEGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLSSLVDNVHWENGSANDISLRFSDAARPCDSDDNAALRSRNLGFKGQREQNDADSVFNSMLKPSGISCQGVQQDGELVHSKRNLQCISGNKSPGESCGSNHGGKGLDLACIVLPSNNDFKDGDSCYIATARSSQLGRIDCSKSAKRSLRKNQVKPSELVGSIDRNVSPYPSGYDVFSPYSGSVGINQDIDGLDNNDNGCGISCCWSKSPRFRESNLYGEIEDRPLISHRVDESDLRAHRSMRHNGGGISPNLETPRSLSMKFRPKSFSDLVGQNVVVRSLLGAISRGRITSFYLFYGPRGTGKTSASRIFAAALNCLSFEEQRPCGQCRECIIFFSGRSKDVKEVDSVRINRSDQVKSLVKSATIPPVSSRFKVFIIDECQLLNGETWASISNSLENLSQHVVFVMITPDLEKIPRSVVSRAQRYHFPKVKDADIVYRLQNICAEEGLDFEQDALDFIAAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTGIVSDDELLDLLDLAFSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCEDGGSEVRSRFYRKYTSEADLQKLNNALKILSETEKQLRISKNQTTWFTVALLQLSSVDYQSVDANDTKFSLRGACNGGQLNFFPWLVTLFFNSFSPWCVGCDWQNGVILSGLCATKSYRLGVQEDHKGTLDSIWYKATEMCHSSQLKTFLRKKGKLSSLHVDRSTACLAIAELEFHHNHHVSKAEKSWKIIASSLQIILGCNVELRITYTPCASESKYAKLKRSSFSIFTCSRRNRQQKSLSSNEQGSESDYADHTSENPMMKDKTSTSDCGMDAVTALRSCEGNLLSSGERFLNRSFQESMRTSCAEVDYSKEKGCNGAHPDPSILDSDNDHFNCFPKTLWLQKKFRSSYSSNKLTFQGIQQQKDFVLSVPKCTCSGTYTYGNEPCIFSGSCKNCTKAS* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00840 985 CDD HLD_clamp_pol_III_gamma_tau 466 529 IPR045085 -
Lapu9g00840 985 Gene3D - 467 529 - -
Lapu9g00840 985 Coils Coil 605 628 - -
Lapu9g00840 985 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 515 IPR027417 -
Lapu9g00840 985 MobiDBLite consensus disorder prediction 822 853 - -
Lapu9g00840 985 Gene3D - 530 643 - -
Lapu9g00840 985 NCBIfam DNA polymerase III subunit gamma/tau 293 639 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Lapu9g00840 985 MobiDBLite consensus disorder prediction 822 840 - -
Lapu9g00840 985 FunFam DNA polymerase III subunit gamma/tau 467 529 - -
Lapu9g00840 985 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 294 724 - -
Lapu9g00840 985 SUPERFAMILY post-AAA+ oligomerization domain-like 530 640 IPR008921 GO:0003677|GO:0006260
Lapu9g00840 985 Gene3D - 287 464 IPR027417 -
Lapu9g00840 985 Pfam DNA polymerase III, delta subunit 309 466 - -
Lapu9g00840 985 FunFam Protein STICHEL-like 1 isoform C 530 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00840 Lapu-Chr9 12407308 12412382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00840 284 622 Core DNA Replication Machinery Family AT1G21690 24.490 6.15e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00840 - - gmx:100812040 1585.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00840 9 12407308 12412382 Lapu9g00840 9 12407308 12412382 ECH
Lapu3g01191 3 12848096 12852841 Lapu9g00840 9 12407308 12412382 PCT