Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00834 ATGAGAGCCACGGAGAAGAAATCTGGGATAATGGGAGGGGGTTCGGAGGGAAACGCCGACGTTTTGCCCTGGCTCAAATCCATGCCGGTGGCGCCGGAGTACCGCCCCACCGCGGCCGAGTTCCAAGATCCAATCGGCTACATATTCAAGATCGAGAAGGAAGCGTCCAAGTACGGCATCTGCAAAATCATCCCTCCCTTCCCTCCTTCGCCCAAGAAAACCGCAATCGCCAACCTCAACCGCTCACTTGCCGTTTCAGGTTCCACATTCACCACGCGCCAGCAGCAGATCGGCTTCTGCCCCCGCCGCCCCCGCCCCGTGCAGCGTCCCGTCTGGCAGAGCGGCGACCACTACACCTTCTCCGAGTTTGAGTCCAAAGCCAAGTCCTTCGAGAAAGCGTACCTCAAACGCCACAATAGAAAGGGTCCGGGCCCAGGCCCAGGCCCGACCCCGCTCGAGACCGAAACGCTCTTCTGGAAGGCCACGCTGGACAAACCCTTCTCCGTGGAATACGCGAACGACATGCCGGGTTCCGCGTTCTCCCCCAAATGCCGTCACACAGGGGATCCCACCTCCCTCGCGGACACTCCGTGGAACATGCGAGCGGTCTCGCGGGCCACCGGTTCGCTGTTGCGTTTCATGAAGGAGGAGATTCCGGGCGTTACTTCTCCCATGGTCTACGTTGCCATGCTCTTCAGCTGGTTCGCGTGGCACGTTGAGGACCACGACTTGCACAGCTTGAACTACCTCCACATGGGCGCCGGCAAGACCTGGTACGGCGTCCCCCGCGACGCTGCCGTCGCGTTTGAGGAGGTTGTTAGGGTTCACGGCTACGGTGGAGAGATTAATCCACTCGTTACTTTTGCTATTCTTGGTGAGAAAACCACGGTGATGTCACCTGAAGTATTAATTAGTGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCGGGGGAATTTGTTGTGACGTTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCGAACATTGCGACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCCATTCGGAGGGCTTCACTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGCGAGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAAGATGTGTTGCAGAACAATGATCTGCTTCATACGCTGGGGGAAGGATCTGCTGTAGTACTTCTTCCTCGTAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAGCAATCCATCAATGTAAGCAATTCTGAGGGAATGCATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGGAGTCATGGAATCAAGCAAGAAAGTTTCTATTCTGTGAAAGACAAGTTTAGTACGATGTATGAAAGGAACAGGATTTCCTCTTTTAATGTAAATGGTAACATAAGCAGTTCAAGTTCTAAGCCACTTCAAAGGGACACTGTGGGAGAAACTAGTGAAGAAGATGGATTGTCAGATCAGAGACTGTTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGATCCAGCAGCTAGATATCTCATGTCAGCTGATTGCAGCTTCTTTAATGATTGGACTGTTGGTTCTGGAGTATCTAACAGCAAATTTACTGCTGCCCCAGAAGAAGCAGCTATTCCTATGCCAAATATGTATACAGGATGGATGAAAAAAAATGTCCAAGATGGTATGCAAGATGTTTCTGTTCAATCTTCTCAGGAGGCTTTAAATATTGAAAGTGAAAATGGCAATACAGCTCTTGCACTATTGGCTTCAGCATATGGAAACTCTTCTGACTCTGAGGAAGATCCGATTTCAGTTGATGGTCATGAAACAGATGTGCTAAAATCTGCTTCAGAAAGTTTACTTTCTCATACTCAAGATTCCCTTGCCAGTCCTATGTCTGCACTTGATGGTGGAGATAATATTCCTTCAAAGAGTGCCAGTTGTGAGGATTTTATGCACAGTAGATTTAACTGTAATTTGAGTCATCAATCTTTAGACCACTCTTTAAAGAAACAGGATTATAATATCACATCAGGGGTTAAATTTGAAAATACGAGGACAGTTCCTAGCTCCACCTCCAATTGTTCCGGAGACGCTCATGACACTGAAAGGTCATTGTCTAAAAAGTCTATGGTTGCCTTTGATAATAAAAATGCTTCCATGGTGCTACAATCTGATGAAGATGCATCCAGAATGCATGTGTTTTGTCTAGAGCATGCTACAGAAGCAGAGAAGCAACTTCGCCCAATAGGTGGAGCCCACATATTTCTCCTATGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAAATGGTGGCAGAAGATTTGGGGATTGATTACACGTGGAAGAGTATTTCATACAGGCATGCTTCCAAGGAGGATGAGGAGAGGATCCAGTCAGCTCTGGATAGCGAGGAAGCCATTCCTGGGAATGGTGACTGGGCTGTAAAACTAGGGATCAATCTCTTTTACAGTGCACATCTTAGTCGCTCTCCCCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTGTGCATTTGGTTGTAGCTCTCCAGCAAGCTCACCTGAAGAGCCAAAGGTCTACCAAAGAAGGGTCAACAGGCAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAACCAGGTCCATCCCCTTTTAGCAAAAAGAGATTCTGAAGATGCTGAGGATGAAAAAATCTTACTTGGGTGGATATTACCTGATGAGAGAATTGAGCGATCAGAAAGTACCCCCAAAAGTGAAACTACTAGCAGAAAATCAGGTAAGAAAAGGAAAATGTCAACAGAGAGTGGACGAACTAGGAAAGGAAGTTTTGCTAAGAAAAATTTAGTTTCATTTTCATATAATTCAACTGAAGATAAACCCAACTCACAGCCAAGGAGGGGTCATAGAAGTAAGAAAGCTAGAAATGTTGAGAGAGATCGTGCTGCTTTGAAAGGGGATACTTCTCCATATCATCATAGAAAGCCTCTAAGCAAACAAACAAACTGCACTGAAAGTGATGCGGTTTCTGATGATTCACTTGATGATGAAGATGATCACATGCAGCATGGGAAGAATTTTCACATTGACAATGATGTGGTTTCAAATGATACAGGGGACTTTGATTCTGATTGGCAGCAGAGGGAAGAACATAGCAGCAAGGACATTGAAGATATGGAGAGAGATGCAATTTCAGAGGATTCTTTGGATGTTGGTTCTCTTCAGCTGCAAAGGAAGACTTCTGAAAGCAAGCATGCCAAATGTATTAGTGAAGAAGATATGATTTCTGATGACCAAATGGAGAGTTGTTTTCAAAAGCGGCAGAGGAGAATTCCTAAAAGCAGGCAAGGAAAGTATCTGACTGGAAAAAATATAATATCTGAAGAACAACTAGAGCTGAAAATGCAGAAGCAGCAACGGAGGAATCCTAAAAGCCGGCAAGCCAAATACCTTAATGAAGAGGATATTGCGTCAGATGACCAATTGGAGGACCATTATCGTAGGTATCAAAGAAGGAATCCTAAAGGCAGGCAGGTCAAATGTGTAGCAGAGGAAGATGAAATGTCTGGTGACCAATTGGAGGATCACTGTCAGAGGCTCAAAACAAGTTTCTCTAGGAAAAAACAAAACAAAGGCATTGATAGAGAAGTTAAATATGTAATGTCTGATGACCAATTGGAGGATCATTTTCCGAAGCGGCAAAGAAGAATTCCTAAGAGCAGGCAAAACAAACACACCAATAAAGAAGTTATGGATGACTCAGCTGAAAATTATTCTCATCTGCTGCATAGAACTCCTAAAAGAAAGCAAGCTAAAGGCATGGATGAAGATGATATGAATTCAGATGATGAAATGGAAGATGATCAGCAGCTGAGAAGAACTCTTCGCAGTAAACAATCTAAACCAAAAACACTTCAACAGATGAAACAAGCCAATTCCCTCCAAGCAAAAAGCCAGTCATCTCGGTCCATAAAACGGGGGTCTGGGGTGCTTGTGAAATCAAAGACTCAGCAAATAAAACACCGGAATAGGCAGTCCAGTAACTCCCGAGAGTTCAGTTTACATATGGAGGACGAGGAAGAAGGTGGACCTAGCACGCGCCTTAGGAAGAGAGCCACAAAAGCTCAGGAGACTGAAGGAAAATTGAAAGACAAGGAAACAAAAAGGAAGAAGGTGAAGAATGGTACAACTGCAAAGGTTTCAGTTGGTCATGCCAAAGGGAAGGATGGGGGAGCTGATTATCAGTGTGATATTGATGGGTGCAGTATGAGCTTTGGGTCAAAACAGGAGCTGCTGCATCACAAGAGAAATATCTGCCCTGTAAAAGGGTGTGGAAAGAAGTTTTTCTCACACAAGTATCTGGTGCAACACCGGCGAGTTCATGAGGATGAGCGACCCTTGAAGTGTCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCACATTCGAGTCCACACTGGTGCACGGCCTTATGTATGTGCAGAACCAGGTTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCGAAGAAGAGTCGTCAATAG 4785 0.4506 MRATEKKSGIMGGGSEGNADVLPWLKSMPVAPEYRPTAAEFQDPIGYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLNRSLAVSGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDHYTFSEFESKAKSFEKAYLKRHNRKGPGPGPGPTPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRHTGDPTSLADTPWNMRAVSRATGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVLISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPASISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHTLGEGSAVVLLPRSSVDISVCSKLRVGSQQSINVSNSEGMHSSKGFVSDDLVFNRSHGIKQESFYSVKDKFSTMYERNRISSFNVNGNISSSSSKPLQRDTVGETSEEDGLSDQRLFSCVTCGILSFSCVAIVQPRDPAARYLMSADCSFFNDWTVGSGVSNSKFTAAPEEAAIPMPNMYTGWMKKNVQDGMQDVSVQSSQEALNIESENGNTALALLASAYGNSSDSEEDPISVDGHETDVLKSASESLLSHTQDSLASPMSALDGGDNIPSKSASCEDFMHSRFNCNLSHQSLDHSLKKQDYNITSGVKFENTRTVPSSTSNCSGDAHDTERSLSKKSMVAFDNKNASMVLQSDEDASRMHVFCLEHATEAEKQLRPIGGAHIFLLCHPDYPKIEAEAKMVAEDLGIDYTWKSISYRHASKEDEERIQSALDSEEAIPGNGDWAVKLGINLFYSAHLSRSPLYSKQMPYNSVIYCAFGCSSPASSPEEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDAEDEKILLGWILPDERIERSESTPKSETTSRKSGKKRKMSTESGRTRKGSFAKKNLVSFSYNSTEDKPNSQPRRGHRSKKARNVERDRAALKGDTSPYHHRKPLSKQTNCTESDAVSDDSLDDEDDHMQHGKNFHIDNDVVSNDTGDFDSDWQQREEHSSKDIEDMERDAISEDSLDVGSLQLQRKTSESKHAKCISEEDMISDDQMESCFQKRQRRIPKSRQGKYLTGKNIISEEQLELKMQKQQRRNPKSRQAKYLNEEDIASDDQLEDHYRRYQRRNPKGRQVKCVAEEDEMSGDQLEDHCQRLKTSFSRKKQNKGIDREVKYVMSDDQLEDHFPKRQRRIPKSRQNKHTNKEVMDDSAENYSHLLHRTPKRKQAKGMDEDDMNSDDEMEDDQQLRRTLRSKQSKPKTLQQMKQANSLQAKSQSSRSIKRGSGVLVKSKTQQIKHRNRQSSNSREFSLHMEDEEEGGPSTRLRKRATKAQETEGKLKDKETKRKKVKNGTTAKVSVGHAKGKDGGADYQCDIDGCSMSFGSKQELLHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSRQ* 1595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00834 1594 ProSiteProfiles Zinc finger C2H2 type domain profile. 1561 1592 IPR013087 -
Lapu9g00834 1594 Pfam JmjC domain, hydroxylase 225 343 IPR003347 -
Lapu9g00834 1594 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 1527 - -
Lapu9g00834 1594 Pfam jmjN domain 32 65 IPR003349 -
Lapu9g00834 1594 FunFam Probable lysine-specific demethylase ELF6 24 365 - -
Lapu9g00834 1594 MobiDBLite consensus disorder prediction 1233 1258 - -
Lapu9g00834 1594 FunFam Probable lysine-specific demethylase ELF6 1558 1587 - -
Lapu9g00834 1594 SUPERFAMILY beta-beta-alpha zinc fingers 1501 1537 IPR036236 -
Lapu9g00834 1594 ProSiteProfiles Zinc finger C2H2 type domain profile. 1531 1560 IPR013087 -
Lapu9g00834 1594 Gene3D Cupin 24 365 - -
Lapu9g00834 1594 MobiDBLite consensus disorder prediction 1039 1064 - -
Lapu9g00834 1594 MobiDBLite consensus disorder prediction 1408 1457 - -
Lapu9g00834 1594 ProSitePatterns Zinc finger C2H2 type domain signature. 1563 1587 IPR013087 -
Lapu9g00834 1594 ProSiteProfiles Zinc finger C2H2 type domain profile. 1501 1530 IPR013087 -
Lapu9g00834 1594 SUPERFAMILY beta-beta-alpha zinc fingers 1541 1585 IPR036236 -
Lapu9g00834 1594 Gene3D Classic Zinc Finger 1529 1559 - -
Lapu9g00834 1594 Gene3D Classic Zinc Finger 1560 1593 - -
Lapu9g00834 1594 Gene3D Classic Zinc Finger 1499 1528 - -
Lapu9g00834 1594 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Lapu9g00834 1594 ProSitePatterns Zinc finger C2H2 type domain signature. 1503 1525 IPR013087 -
Lapu9g00834 1594 SMART JmjN_1 30 71 IPR003349 -
Lapu9g00834 1594 MobiDBLite consensus disorder prediction 1241 1258 - -
Lapu9g00834 1594 MobiDBLite consensus disorder prediction 1198 1221 - -
Lapu9g00834 1594 ProSiteProfiles JmjC domain profile. 192 361 IPR003347 -
Lapu9g00834 1594 MobiDBLite consensus disorder prediction 976 1006 - -
Lapu9g00834 1594 MobiDBLite consensus disorder prediction 1364 1400 - -
Lapu9g00834 1594 MobiDBLite consensus disorder prediction 1307 1340 - -
Lapu9g00834 1594 FunFam Probable lysine-specific demethylase ELF6 1528 1557 - -
Lapu9g00834 1594 MobiDBLite consensus disorder prediction 1106 1131 - -
Lapu9g00834 1594 SUPERFAMILY Clavaminate synthase-like 114 379 - -
Lapu9g00834 1594 MobiDBLite consensus disorder prediction 976 1157 - -
Lapu9g00834 1594 MobiDBLite consensus disorder prediction 1010 1025 - -
Lapu9g00834 1594 ProSitePatterns Zinc finger C2H2 type domain signature. 1533 1555 IPR013087 -
Lapu9g00834 1594 SMART c2h2final6 1561 1587 IPR013087 -
Lapu9g00834 1594 SMART c2h2final6 1478 1500 IPR013087 -
Lapu9g00834 1594 SMART c2h2final6 1501 1525 IPR013087 -
Lapu9g00834 1594 SMART c2h2final6 1531 1555 IPR013087 -
Lapu9g00834 1594 MobiDBLite consensus disorder prediction 1286 1467 - -
Lapu9g00834 1594 SMART cupin_9 192 361 IPR003347 -
Lapu9g00834 1594 MobiDBLite consensus disorder prediction 675 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00834 Lapu-Chr9 12299741 12309516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00834 788 889 C2H2 Transcription Factor Family AT5G04240 33.333 3.16e-14 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu9g00834 JmjC 3.8e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00834 - - gmx:100775271 2637.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00834 9 12299741 12309516 Lapu9g00834 9 12299741 12309516 ECH
Lapu9g00834 9 12299741 12309516 Lapu3g01193 3 12870884 12880773 PCT