Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00833 ATGGAGCCCTCTGAATCCGAATCAGTTAGTTCCCCCACCAAGGACCCGCAATTGGGTGAGCCTTCTTCCCCTGTTCACCCACTCGATCATGATCCTCAACCCTCAGATCTCAATCACGTTGCCCAAGATGGTGATGCACTTGGTGGGGAGCTTCAGGATAAGTTGGATTTGAAGGACGAGAGTGAGAGTGAGAATAAAGGTTTGAACTTGGAAGATGGGGGTGAAAATTTGAGTGAAGGTGCTGCCCCTGAAGGTGGTAAGGGAGAAGGGAGTGATGATGATGATGCTGTTGATGGTGATGTCGTCGTTGTTGTTGATGATGATTATTGCAATGGTGGGGACGAGCGGTGTGATTGGATTGGGAATGTGAATGAGCGTGAGAGTGATAAAGTGGGTGGAGATGTTGAGGAAGTGGAGAACAGGGATGAGAGGAGCAGTGGTAGAGCTCAACAGTACCCCTTGAGGCCAGAGGCTGAAGACTGTGCATTTTATCTCAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTCAATCATCCGCTTAAGAGGAAAAATCAGGCTAAAAGAGAGAATGCGGGAGAAAGAGAAGAACATGCAGAGAGATCAGGACAGATGGAATGCAAGTATTATTTAAGATCTGGGGGGTGCAAGTTTGGAAAGGCTTGTAAGTTTAATCACACAAGGGGAAAGTGTTCATCAGCTTCCCCAATTGTAGAGCTTAACTTCCTTGGCCTGCCTATTCGAGTGGGAGAGAGAGAGTGTCATTATTACATGCGTACTGGCTCTTGTAAGTTTGGAGCAAATTGCAAGTTTAATCATCCTGATCCTACAGCTGGAGGAGGTGATTCTCTTTCTGGTTATGGTAATGGAAGTTCTGTTTCATTGCAAGGTGGACCACAATCATCTATATCCTCATGGTCTTCTACTAGACCATTAAATGAATCCACTCCTTTTGTGCCGGTGATACTTTCAGCTAATCCAGGGATTTCTACTCAAAGTTCTGAGTGGGATGGATATCAGGCACCTGTCTATCTACCTGAGAGGAATATGCATCTACCTTCAACATATGTCATGAACAACCCGGTTATGGAAACAAATGTTTATATGCACCATCAAAAGCAAATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGTTATTTCTTAAAAACTGGGGATTGCAAATTTAAATCTAATTGTAAGTTTCACCATCCAAAGAATCGAATTGCAAGATTACCTCCATGCAGCCTTAGTGACAAGGGTCTACCTTTGAGACCAGACCAGAATGTTTGCACATATTACAGCCGATATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTCAACCACCCACCACCCTCAGCTATGACCGGACTTGATCAACAATCCTCGTATACAAATTTGACTAGTGTTGATGTGGCTGAAAATGGAGGTACCAGTGACGAGAATCAGCCGTCTCTATAA 1479 0.4415 MEPSESESVSSPTKDPQLGEPSSPVHPLDHDPQPSDLNHVAQDGDALGGELQDKLDLKDESESENKGLNLEDGGENLSEGAAPEGGKGEGSDDDDAVDGDVVVVVDDDYCNGGDERCDWIGNVNERESDKVGGDVEEVENRDERSSGRAQQYPLRPEAEDCAFYLKTGTCKFGFNCKFNHPLKRKNQAKRENAGEREEHAERSGQMECKYYLRSGGCKFGKACKFNHTRGKCSSASPIVELNFLGLPIRVGERECHYYMRTGSCKFGANCKFNHPDPTAGGGDSLSGYGNGSSVSLQGGPQSSISSWSSTRPLNESTPFVPVILSANPGISTQSSEWDGYQAPVYLPERNMHLPSTYVMNNPVMETNVYMHHQKQMQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCSLSDKGLPLRPDQNVCTYYSRYGICKFGPACKFNHPPPSAMTGLDQQSSYTNLTSVDVAENGGTSDENQPSL* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00833 492 ProSiteProfiles Zinc finger C3H1-type profile. 384 412 IPR000571 GO:0046872
Lapu9g00833 492 Gene3D - 429 477 - -
Lapu9g00833 492 Gene3D - 340 419 - -
Lapu9g00833 492 Gene3D - 128 191 - -
Lapu9g00833 492 MobiDBLite consensus disorder prediction 128 148 - -
Lapu9g00833 492 SUPERFAMILY CCCH zinc finger 250 276 IPR036855 GO:0046872
Lapu9g00833 492 SUPERFAMILY CCCH zinc finger 389 413 IPR036855 GO:0046872
Lapu9g00833 492 MobiDBLite consensus disorder prediction 283 310 - -
Lapu9g00833 492 SMART c3hfinal6 155 182 IPR000571 GO:0046872
Lapu9g00833 492 SMART c3hfinal6 430 457 IPR000571 GO:0046872
Lapu9g00833 492 SMART c3hfinal6 384 411 IPR000571 GO:0046872
Lapu9g00833 492 SMART c3hfinal6 202 229 IPR000571 GO:0046872
Lapu9g00833 492 SMART c3hfinal6 249 276 IPR000571 GO:0046872
Lapu9g00833 492 Gene3D - 192 279 - -
Lapu9g00833 492 SUPERFAMILY CCCH zinc finger 206 231 IPR036855 GO:0046872
Lapu9g00833 492 SUPERFAMILY CCCH zinc finger 428 455 IPR036855 GO:0046872
Lapu9g00833 492 SUPERFAMILY CCCH zinc finger 154 183 IPR036855 GO:0046872
Lapu9g00833 492 MobiDBLite consensus disorder prediction 49 69 - -
Lapu9g00833 492 ProSiteProfiles Zinc finger C3H1-type profile. 155 183 IPR000571 GO:0046872
Lapu9g00833 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 159 181 IPR000571 GO:0046872
Lapu9g00833 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 386 411 IPR000571 GO:0046872
Lapu9g00833 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 207 227 IPR000571 GO:0046872
Lapu9g00833 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 252 275 IPR000571 GO:0046872
Lapu9g00833 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 433 457 IPR000571 GO:0046872
Lapu9g00833 492 MobiDBLite consensus disorder prediction 1 18 - -
Lapu9g00833 492 MobiDBLite consensus disorder prediction 128 150 - -
Lapu9g00833 492 ProSiteProfiles Zinc finger C3H1-type profile. 202 230 IPR000571 GO:0046872
Lapu9g00833 492 MobiDBLite consensus disorder prediction 285 310 - -
Lapu9g00833 492 PANTHER PROTEIN PHOSPHATASE RELATED 13 462 - -
Lapu9g00833 492 MobiDBLite consensus disorder prediction 1 99 - -
Lapu9g00833 492 ProSiteProfiles Zinc finger C3H1-type profile. 430 458 IPR000571 GO:0046872
Lapu9g00833 492 ProSiteProfiles Zinc finger C3H1-type profile. 249 277 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00833 Lapu-Chr9 12289629 12294604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00833 380 470 C2H2 Transcription Factor Family AT3G02830 51.064 1.19e-22 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu9g00833 zf-CCCH 4.5e-09 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01194 3 12883402 12888161 Lapu9g00833 9 12289629 12294604 ECH
Lapu9g00833 9 12289629 12294604 Lapu9g00833 9 12289629 12294604 ECH
Lapu3g01194 3 12883402 12888161 Lapu9g00833 9 12289629 12294604 PCT