Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00826 ATGGCGGCGATGGCGGAGGCGAGGAAGGCTCCACGGCCGGGCAAGGGCGGCTACGAAGCACACGGCCTGAGCGAGGAAGAAGCGCGTGTTCGAGCAATCGCGGAGATCGTGAACTCAATGGTGGACCTTTCTCACAAGGGCCAGAACGTGGACCTCAATGCGCTCAAGTCCGCAGCGTGCCGCAAGTACGGCCTCTCACGCGCGCCTAAGCTCGTCGAGATGATCGCTGCGCTCCCGGACGCTGAGCGGGAAACGCTCCTCCCCAAGCTCCGCGCCAAGCCCGTCCGCACCGCCTCCGGGATTGCCGTAGTCGCCGTCATGTCCAAACCGCACCGCTGCCCGCACATCGCTACCACCGGGAACATCTGCGTTTACTGCCCCGGCGGTCCTGACTCCGACTTTGAGTACAGTACTCAGTCCTACACCGGTTACGAACCAACCAGCATGCGCGCGATTCGTGCGAGGTATAATCCATATGTCCAGGCGAGGAGCAGGATAGATCAGCTTAAGCGTTTGGGTCATAGCGTAGACAAGGTTGAATTTATCTTAATGGGTGGTACCTTCATGTCACTTCCAGCTGATTACCGTGATTACTTTATAAGAAATCTTCATGATGCTTTGTCTGGGCACACTTCTGTCAATGTGGAAGAGGCAGTAGCTTACTCTGAGCATGGAGCAACCAAGTGTATTGGCATGACGATTGAAACGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGTCAAATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACCTATGAGGATGTTGCTCGAGACACAAATAGAGGACACACTGTAGCTGCTGTAGCCGATTGCTTTTGCTTAGCTAAGGATGCTGGTTTCAAGGTTGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAGAGGGACATGGAAAGTTTTCGGGAGTTTTTTGAGAGTCCCATGTTTAGAGCAGATGGGCTTAAAATATATCCTACACTTGTAATTCGTGGAACGGGGCTTTATGAGCTCTGGAAGACTGGCAGGTATAGAAATTATCCACCCGAGCAACTTGTGGACATCATAGCAAGGATCCTTGCAATGGTACCCCCATGGACACGTGTTTATAGAGTTCAGCGGGATATTCCCATGCCTTTGGTTACCTCCGGAGTTGAGAAAGGGAATTTGAGGGAGCTAGCATTAGCTCGAATGCAAGACCTAGGATTGAAATGTCGTGATGTTCGGACCAGGGAAGCTGGAATCCAGGATATTCACCACCAAATTAGGCCAGAGGAGGTGGAGCTTGTTCGGCGTGATTATATGGCAAATGAGGGTTGGGAAACATTTCTATCATATGAAGATACACGACAGGATATCCTTGTTGGTTTGTTGAGACTACGAAAATGTGGCCGCAATACTACATGTCCAGAGCTGATGGGGAAGTGTTCTATTGTTCGAGAACTCCATGTTTATGGAACTGCCGTACCAGTTCATGGACGGGATGCTGACAAGCTACAACACCAGGGTTATGGTACACTTTTAATGGAGGAGGCAGAGCGTATTGCTTGCAGAGAACACAGATCAACAAAAATAGCTGTAATTTCAGGGGTGGGCACACGCCATTATTACAGGAAACTGGGATATGAGCTTGAAGGACCTTACATGGTTCTTTTTGAAGTTGCATCATTAATTGTACTACCATGTGTTCCAATTGACTTTGCATTCACCTTCTTGTACAAGTTTGTCACTATAGAGATGTCTACGCTTGCCATCGTATCATGTCTTTCTGGGTGA 1797 0.4953 MAAMAEARKAPRPGKGGYEAHGLSEEEARVRAIAEIVNSMVDLSHKGQNVDLNALKSAACRKYGLSRAPKLVEMIAALPDAERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSVNVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPMFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMQDLGLKCRDVRTREAGIQDIHHQIRPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIACREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVLFEVASLIVLPCVPIDFAFTFLYKFVTIEMSTLAIVSCLSG* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00826 598 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 48 557 IPR034687 -
Lapu9g00826 598 SFLD elongater protein-like 51 557 - -
Lapu9g00826 598 SFLD ELP3-like 51 557 IPR034687 -
Lapu9g00826 598 FunFam Elongator complex protein 3 409 560 - -
Lapu9g00826 598 MobiDBLite consensus disorder prediction 1 22 - -
Lapu9g00826 598 CDD Radical_SAM 110 357 - -
Lapu9g00826 598 PIRSF HAT_Elp3 18 559 IPR034687 -
Lapu9g00826 598 SMART MiaB 103 365 IPR006638 GO:0003824|GO:0051536
Lapu9g00826 598 Gene3D - 412 558 - -
Lapu9g00826 598 Pfam Acetyltransferase (GNAT) family 413 549 IPR000182 GO:0016747
Lapu9g00826 598 SUPERFAMILY Radical SAM enzymes 133 372 - -
Lapu9g00826 598 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 410 570 IPR000182 GO:0016747
Lapu9g00826 598 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 13 557 IPR039661 -
Lapu9g00826 598 Pfam Radical_SAM C-terminal domain 327 406 IPR032432 -
Lapu9g00826 598 ProSiteProfiles Radical SAM core domain profile. 96 386 IPR007197 GO:0003824|GO:0051536
Lapu9g00826 598 Pfam Radical SAM superfamily 121 309 IPR007197 GO:0003824|GO:0051536
Lapu9g00826 598 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 369 556 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00826 Lapu-Chr9 12082659 12087418 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lapu9g00826 Radical_SAM 2.7e-17 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00826 K07739 - gmx:100818764 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00826 9 12082659 12087418 Lapu9g00826 9 12082659 12087418 ECH