Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00822 ATGGCCGATTCCTGCCTCTTCTCTTCACATTCCTCGCGCTTCCACAACATAGCCAAACCCCTCATCTTCTCACCTCCTTCCAAACCCCTCACACTCCATTTCTCACCCTCGCTCTGTCTCTCCCTTGCCGCACGAACCCACCGTTCTCCCGTCCTCACACACGTTGCCCAAACTTCTGATTGGGCTCAGCAAGAAGACAACACCGGAACCCCCCAGGAACAACAACAACCAGAAGAGGGTGGCTTCCACGATTGGGAGCCCAACGGAGAAGGCGCAGAAGGTGAGAGTTTCGGGGAACCTCCGGAAGAGGCCAAACTCTTTGTCGGCAACTTGCCATACGACGTTGATAGCCAGAAATTGGCCATGCTTTTCGAACAAGCCGGAATTGTTGAAATCGCTGAGGTTATTTATAACAGGGACACTGACCGGAGTCGTGGATTTGGGTTTGTGACTATGAGTACTGTTGAAGAAGCTGAAAAAGCTGTGGAGAAATTTAATAGCTATGATTATGATGGAAGACTGTTGACTGTTAATAAGGCCTCTCCGAGAGGAGCTCAACCTGAGCGCCCACCTCGTCGTAACTTTGAGCCTTCCTTTTCAGTTTATGTTGGTAATTTGCCATGGGATGTTGATAATACCAGGTTGGAGCAACTTTTCAGTGAGCATGGTAAGGTTGTGAGTGCTAGGGTAGTTTATGACAGGGAAAGTGGTCGTTCACGTGGCTTTGGTTTTGTCACAATGTCGGATGAGTCAGAAATGAATGATGCTGTTGCTGCTCTTGATGGTCAGAGTTTGGATGGAAGGTCAATTAGGGTGAATGTTGCTGAGGACAGAGCCAGGCGTAGCTCTTTTTAA 855 0.4889 MADSCLFSSHSSRFHNIAKPLIFSPPSKPLTLHFSPSLCLSLAARTHRSPVLTHVAQTSDWAQQEDNTGTPQEQQQPEEGGFHDWEPNGEGAEGESFGEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGIVEIAEVIYNRDTDRSRGFGFVTMSTVEEAEKAVEKFNSYDYDGRLLTVNKASPRGAQPERPPRRNFEPSFSVYVGNLPWDVDNTRLEQLFSEHGKVVSARVVYDRESGRSRGFGFVTMSDESEMNDAVAALDGQSLDGRSIRVNVAEDRARRSSF* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00822 284 FunFam 31 kDa ribonucleoprotein, chloroplastic 188 283 - -
Lapu9g00822 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 175 IPR000504 GO:0003723
Lapu9g00822 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 271 IPR000504 GO:0003723
Lapu9g00822 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 277 IPR000504 GO:0003723
Lapu9g00822 284 SUPERFAMILY RNA-binding domain, RBD 100 193 IPR035979 GO:0003676
Lapu9g00822 284 CDD RRM2_NsCP33_like 201 275 - -
Lapu9g00822 284 PANTHER OS02G0815200 PROTEIN 22 279 - -
Lapu9g00822 284 SMART rrm1_1 200 273 IPR000504 GO:0003723
Lapu9g00822 284 SMART rrm1_1 105 178 IPR000504 GO:0003723
Lapu9g00822 284 Gene3D - 51 189 IPR012677 -
Lapu9g00822 284 MobiDBLite consensus disorder prediction 59 77 - -
Lapu9g00822 284 Gene3D - 190 284 IPR012677 -
Lapu9g00822 284 SUPERFAMILY RNA-binding domain, RBD 188 281 IPR035979 GO:0003676
Lapu9g00822 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Lapu9g00822 284 MobiDBLite consensus disorder prediction 59 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00822 Lapu-Chr9 11926252 11929644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00822 106 281 Eukaryotic Initiation Factors Gene Family AT3G16380 37.766 1.56e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00822 - - gmx:100810381 432.95