LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu9g00810	ATGCCGCCGGATTCTGTCGACCAAGACCTCGACGATCCTGACATCGAATTCGTCGAGGTTGATCCCTCCGGTCGCTATGGTCGGTACAAGGAAGTTTTAGGGAAAGGGGCTTTCAAGAAAGTATATCGAGCGTTTGATGAATTGGAAGGTATTGAAGTGGCTTGGAATCAGATTAAGCTGGCGGATCTGTTGCGTAACTCCGAAGATTTCGAGCGACTTTATTCGGAGGTTCATTTGCTCAAGACTTTGAAGCATAAGAATATCATTAAGTTTTACAACTCATGGATTGACTCAAAGAGCGAGAACATCAACTTCATTACTGAAATTTTCACCTCGGGGACGTTGCGCCAATACCGGAAGAAACATAAGCATGTTGATTTGAGAGCAGTGAAGAAATGGTCCAAGCAGATTCTGGAAGGCCTCTTCTATCTTCACAGTAATAATCCTCCGATCATTCATCGTGACCTGAAGTGTGATAACATTTTTGTCAATGGGAATCAAGGGGAGGTAAAAATTGGTGATTTAGGATTGGCAGCTATCCTCCAGCAGGCCAATTCAGCTCACAGTGTCATAGGAACTCCGGAGTTCATGGCCCCAGAACTTTACGAAGAGGAATACAACGAGCTTGTTGACATCTATGCTTTCGGTATGTGCTTGCTAGAGTTGGTAACAGTTGAGTACCCCTATGTTGAATGTGCCAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCATCATTGGCAAAAGTTACAGATCCTGAAGTTAAAGCATTTATTGAAAAGTGTATTGCTCATGTATCTGAACGGTTGTCTGCGAAGGACCTCTTGATGGATCCCTTCCTTCAGTCAGATTATGATAATGAAAGTGTAGGTGGATCTTCAAGATCTCAAATCCATCATTCAGGAAATATGTCTCATAACCAAGCTATTGCTGTCGATACTTCTGTTGAGGCAAGTAGGGAATTCACGGTGGAAGGTCAGAGGAGAGATAATAATACAATATTTTTAAAATTGAGAATTGCAGATTGCTCAGGTCATATTCGCAATATCCACTTTCCTTTCGATATTGAAGCAGACACTTCAACCTCTGTTGCTAGTGAAATGGTTGAGGAGTTGGAACTTACTGATCAGGATGTTACAACTATTGCTAGGATGATTGACTCTGAAATTCGGTATCACATTCCTAGTTGGAATGTCAGTGAAATTCCTGTTGACAGTTATAGTCAAGATTCAGGCTATACCTCTGAAAGTAGGCCAGAGGCCTCTCCAATGAAACTTGATTCCGTTCCTTCTCCTGGCAGTCTTGCATTAGAAATATTACCTTCAGGTCGAAAGTTCTGGTCAGACTCACCAAGGGGACTCGGTGGAAACTCTCCATCTCGCCTTGCTACTTCAAAAACTCCTTTTGCTGCAGATGCAAATGCTGAGGAAGGCAGCCCAGCCGCGAATGGTGATATTTCTGCAGATGATCGCGTTGGTGATTGTAGTGATGAGATTGTTGATTCCCCTTCCAGTGCGAAAAGTATTAAATCAGGAGCAACCGGTGAAAAATCTCCTATGAAAGAAATATCTGGAAGCGTGAAAGATCCGGAAACAGAATACATCAATCACATAGCAACGGAACTGGAGAATTTGTTGGTTAAACAAAGAGAGGAGTTAGATGAACTAAAGAGGAAGCACAAATTAGCTGTCTCAGATCTTTTGAAGGAACTTTCTCCAGAAATTAGCCAGCAGGTTCTAAATATATGCAACCTACAAATGCCCGACGATGAAATGTAG	1791	0.4227	MPPDSVDQDLDDPDIEFVEVDPSGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQIKLADLLRNSEDFERLYSEVHLLKTLKHKNIIKFYNSWIDSKSENINFITEIFTSGTLRQYRKKHKHVDLRAVKKWSKQILEGLFYLHSNNPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTSGIKPASLAKVTDPEVKAFIEKCIAHVSERLSAKDLLMDPFLQSDYDNESVGGSSRSQIHHSGNMSHNQAIAVDTSVEASREFTVEGQRRDNNTIFLKLRIADCSGHIRNIHFPFDIEADTSTSVASEMVEELELTDQDVTTIARMIDSEIRYHIPSWNVSEIPVDSYSQDSGYTSESRPEASPMKLDSVPSPGSLALEILPSGRKFWSDSPRGLGGNSPSRLATSKTPFAADANAEEGSPAANGDISADDRVGDCSDEIVDSPSSAKSIKSGATGEKSPMKEISGSVKDPETEYINHIATELENLLVKQREELDELKRKHKLAVSDLLKELSPEISQQVLNICNLQMPDDEM*	597

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu9g00810	596	SMART	serkin_6	27	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu9g00810	596	MobiDBLite	consensus disorder prediction	410	437	-	-
	Lapu9g00810	596	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	340	394	IPR024678	GO:0004674\|GO:0005524
	Lapu9g00810	596	Coils	Coil	543	570	-	-
	Lapu9g00810	596	Gene3D	Transferase(Phosphotransferase) domain 1	110	292	-	-
	Lapu9g00810	596	FunFam	Probable serine/threonine-protein kinase WNK3	336	427	-	-
	Lapu9g00810	596	CDD	STKc_WNK	25	285	-	-
	Lapu9g00810	596	Gene3D	-	336	420	-	-
	Lapu9g00810	596	Gene3D	Phosphorylase Kinase; domain 1	11	108	-	-
	Lapu9g00810	596	ProSiteProfiles	Protein kinase domain profile.	27	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu9g00810	596	FunFam	Probable serine/threonine-protein kinase WNK1	12	108	-	-
	Lapu9g00810	596	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	13	575	-	-
	Lapu9g00810	596	SUPERFAMILY	Protein kinase-like (PK-like)	29	286	IPR011009	-
	Lapu9g00810	596	FunFam	probable serine/threonine-protein kinase WNK9	110	290	-	-
	Lapu9g00810	596	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	151	163	IPR008271	GO:0004672\|GO:0006468
	Lapu9g00810	596	MobiDBLite	consensus disorder prediction	476	531	-	-
	Lapu9g00810	596	Pfam	Protein kinase domain	30	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu9g00810	Lapu-Chr9	11671756	11676056	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu9g00810	102	595	MAP Kinase Kinase Kinase	AT3G48260	54.343	5.28e-168	483

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Lapu9g00810		Pkinase	5.2e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu9g00810	K08867		-	gmx:100272204	917.146