Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00805 ATGAGTGCTCCCATGGACACAGAGCTCACAACCTACGAAAATGGCGCTGCTTCCCAGCACTCGCTTCCCGAGGACAAAGTTCTTGTCCCTGTCGAGGTAACCCTAAAACCTTCCAGCACGGCTAAAATCGAAGATATTCGTTCCGCCGTTGAAGGCAGGATGCTTGAAAAGAGGAGTTTGAGCTATATCGATGGGCCCATTCCGGTCCCTCTTGATGAGGCGTTTCTCGCAGATAACGTGCAAAGAATTTGCGTCTGTGGATGTGATACTGATGAAGGGAGGCACAATGATAATGTTCTTTTGTTCTGGCAGGTCAAGCCTATTGTACATGTTTTTCAGCTTAGCGAGGAAGGTCCGTGTGAGGATATAAGCTCCGATGGCCAGTCTTCCAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGACTAAAGCAACGGTTATTGCGTTATGCAGCTAGTGCTTTGCTCTTTACCGAAAAAGGGGTTGATCCATTCCTTGTTTCATGGAATCGCATAATTCTGTTACATGGACCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTAGCTCAGAAATTAGCAATTCGATTCAATTCAAGATACCCTCAGTCCCAGCTTATCGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTAGCGAAGCTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTCGTATTTGTATTGATTGATGAAGTCGAAAGCCTTGCTGCTGCTAGAAAAGCTGCCCTATCTGGTTCTGAACCTTCTGATTCCATTCGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTAAAATCATCTCCTAATGTGATAATTCTAACCACTTCCAACATAACTGCAGCTATTGACATTGCTTTCGTTGATCGAGCTGATATCAAAGCATATGTTGGTCCTCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCCTGCTTGCAGGAACTGATACGTACAGGGATCTTGACTAGTTTACAGGATTGCAAGAATGTCATGCTTCCAAATTACGCTTGTGCAAAGGAGAGGTTGAACGCTCCAGATTTTCACGAGGGTGCTATATTCATGCAACTTTGCAAACACTTATTGGAAACCGCCGAGGCATGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAGCTTCCATTTTTGGCACATGCTGCACTTTCAAATCCTTTTGATTGCAACCCTATTAAGTTCTTATGTACAATGGTAGAAACAGCAAAGAGGGAGCGTTCTGAGCTTCCTGACTAA 1344 0.433 MSAPMDTELTTYENGAASQHSLPEDKVLVPVEVTLKPSSTAKIEDIRSAVEGRMLEKRSLSYIDGPIPVPLDEAFLADNVQRICVCGCDTDEGRHNDNVLLFWQVKPIVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLAIRFNSRYPQSQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGILTSLQDCKNVMLPNYACAKERLNAPDFHEGAIFMQLCKHLLETAEACEGMSGRSLRKLPFLAHAALSNPFDCNPIKFLCTMVETAKRERSELPD* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00805 447 FunFam pachytene checkpoint protein 2 homolog 125 347 - -
Lapu9g00805 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 412 IPR027417 -
Lapu9g00805 447 Pfam ATPase family associated with various cellular activities (AAA) 185 330 IPR003959 GO:0005524|GO:0016887
Lapu9g00805 447 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 185 203 IPR001270 GO:0005524
Lapu9g00805 447 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 299 313 IPR001270 GO:0005524
Lapu9g00805 447 SMART AAA_5 181 333 IPR003593 GO:0016887
Lapu9g00805 447 CDD RecA-like_Pch2-like 131 329 - -
Lapu9g00805 447 ProSitePatterns AAA-protein family signature. 303 322 IPR003960 GO:0005524|GO:0016887
Lapu9g00805 447 Gene3D - 124 348 IPR027417 -
Lapu9g00805 447 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 17 444 IPR044539 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00805 Lapu-Chr9 11568239 11574927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00805 185 399 Calmodulin-binding Proteins AT3G56690 28.182 1.20e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00805 K22399 - gmx:100795009 828.935