Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00760 ATGGGTGGCAATGGCAAGCACAGATGGAAAATATCCTTCCACCGTTCCTCTTCGCAATCCTCCAAGCTTCCTCCCAAGGAATTCACGTGCCCCATTTCCGGCTCCTTAATGTACGACCCGGTTGTCATCGCTTCCGGCCAAACCTTCGAACGCCTCGCTGTTCAAGTCTGCAAGGACCTCAACTTCTACCCCAAGCAAGAAGACGGCACCCGACCCGATTTCTCAACACTAATCCCTAATTTAGCCATCAAAACAACAATCATCAACTGGTGTCGCAAATCCCACGCCCAACAACCCTGCGCACCCGATTACGACTCCCTCCACCGCCACGTCAGACAAGCAATGGCCGTGTCAGTGGAACAAAACTGGCAACAACAACAAGAAGAAGAGGAAGAAGAACGAATTAGGGTTTCGGAAAAGGTGCTTCTCAACGCGGTCGCTGATAAACCCCCTGTCATTTTCTCCCACGCCGCCACTGAGTTAGGCCCTCGAGTCAACCATTTCAACTCCGGATCCTCCTCCGAGGAATCAGTCATAATTCCTCCCAGTCCGGGAACGCCGTTACCCTTCACCATTCGTCCAACCTGCTTCTCATCGTCCTCCTCCTCCTGCGAGATCGAAATCGAAAACCCTAGCGCGCCGCTATCAGAGGAAGAGGAAGGAATATTGAGGAAATTGAAGAGCAGCGAGGTGTTTGAGCAAGAAGAAGGCGTAATCGCGCTGAGGAAGATCACGAGGAGCAAAGAGGAGGCTAGGGTCTTGCTCTGCACGCCGCGGGTGCTGCTGGCGCTCCGCGGTTTGATCGCTTCGCGGTACGGCGTTGTTCAGGTCAACACGGTGGCGTCGCTTGTCAACCTCTCGCTGGAGAAGCAGAACAAGGTGAAGATCGTGAGGTCGGGGTTTGTTCCGTTTTTAATCGATGCTTTGAAGGGGGGATTGGGTGAGTCGCAGGAGCACGCTGCGGGCGCGCTATTCAGTTTAGCTTTGGATGATGACAATAAAATGGCCATTGGCGTTCTCGGCGCGTTGCAGCCGCTGATGCACGCGCTGCGTGCCGACTCCGAGAGGACTCGGCACGACTCGGCGCTAGCGCTGTATCATCTGAGCCTTGTTCAGAGTAACCGAGTGAAACTGGTGAAACTCGGGGCGGTGCCGACGCTTCTGTCCATGGTGGTGGCGGGGAACTTAGCGAGCCGGGTGCTGCTGATCCTGTGCAACCTAGCCGTGTGCACGGAGGGGCGCACGGCGATGCTTGACGCAAACGCTGTGGAGTGTCTGGTGGGGCTATTGAGGGCGAACGAGTTGGACTCGGAGGCGACTCGGGAGAATTGCGTGGCGGCGCTGTTCGCGCTGAGTCATAGGAGCTTGAGGTTCAAAGGGTTGGCGATGGACGCGAGGGTTGTGGAGGTTTTGAAGGAGGTTGAACAGACGGGAACGGAGAGGGCCAGGGAGAAGGCGAGGAAGGTGTTGCACATGTTGAGAACTCTGGGCGATGGAGATGGTGATGAAGGTGATGACTTTTACGACTCGGCCGGGTTGACGCGGCATCGGTACCGACTTGGTGGTTCCAGGAACCACAACATCGTCAACACGACCACGTTTTAG 1605 0.5583 MGGNGKHRWKISFHRSSSQSSKLPPKEFTCPISGSLMYDPVVIASGQTFERLAVQVCKDLNFYPKQEDGTRPDFSTLIPNLAIKTTIINWCRKSHAQQPCAPDYDSLHRHVRQAMAVSVEQNWQQQQEEEEEERIRVSEKVLLNAVADKPPVIFSHAATELGPRVNHFNSGSSSEESVIIPPSPGTPLPFTIRPTCFSSSSSSCEIEIENPSAPLSEEEEGILRKLKSSEVFEQEEGVIALRKITRSKEEARVLLCTPRVLLALRGLIASRYGVVQVNTVASLVNLSLEKQNKVKIVRSGFVPFLIDALKGGLGESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRADSERTRHDSALALYHLSLVQSNRVKLVKLGAVPTLLSMVVAGNLASRVLLILCNLAVCTEGRTAMLDANAVECLVGLLRANELDSEATRENCVAALFALSHRSLRFKGLAMDARVVEVLKEVEQTGTERAREKARKVLHMLRTLGDGDGDEGDDFYDSAGLTRHRYRLGGSRNHNIVNTTTF* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00760 534 Pfam U-box domain 25 93 IPR003613 GO:0004842|GO:0016567
Lapu9g00760 534 SMART arm_5 330 370 IPR000225 GO:0005515
Lapu9g00760 534 SMART arm_5 410 453 IPR000225 GO:0005515
Lapu9g00760 534 SMART arm_5 289 329 IPR000225 GO:0005515
Lapu9g00760 534 Gene3D - 218 502 IPR011989 -
Lapu9g00760 534 Coils Coil 120 140 - -
Lapu9g00760 534 ProSiteProfiles U-box domain profile. 23 97 IPR003613 GO:0004842|GO:0016567
Lapu9g00760 534 SUPERFAMILY RING/U-box 14 96 - -
Lapu9g00760 534 PANTHER U BOX DOMAIN-CONTAINING 20 493 - -
Lapu9g00760 534 SMART Ubox_2 27 90 IPR003613 GO:0004842|GO:0016567
Lapu9g00760 534 MobiDBLite consensus disorder prediction 1 26 - -
Lapu9g00760 534 Pfam Armadillo/beta-catenin-like repeat 330 369 IPR000225 GO:0005515
Lapu9g00760 534 SUPERFAMILY ARM repeat 222 493 IPR016024 -
Lapu9g00760 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 103 IPR013083 -
Lapu9g00760 534 FunFam RING-type E3 ubiquitin transferase 217 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00760 Lapu-Chr9 10361384 10363677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00760 1 534 U-box Gene Family AT5G65200 54.657 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00760 - - gmx:100784564 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g01437 4 31511226 31513451 Lapu9g00760 9 10361384 10363677 ECH
Lapu9g00760 9 10361384 10363677 Lapu9g00760 9 10361384 10363677 ECH