Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00742 ATGGAGATTGTGATTTCTTTGATCATATTGTTTGTGGGGATAGCGATTTTGGTGATTATCCATGTTTGCATCGTCGGGAGAGCCTTCAGAGGGGACACTAATGATGAAAGTGGTACTGAACAGGGGCAGAACATGAATGGAATGAAGAGAATGTTGGGTGGAGACAACATTGATGACCTCAAAAACCTTCCTTGCTTTGTGTACGAGGAGGCAGCAGCAACAGAGAGAAGAGGGTGTAGCCTCGTGGACTGTGCTGTTTGCTTGGAGAGTTTCAAGGTTGGTGATGTGTGCAGGTTGTTGCCCAATTGCAACCACACCTTCCATGTGCACTGTATAGACTCCTGGATTCTCCACACACCCATTTGTCCCACTTGTAGAACATGGGTTCTTTCAGTAACAGAACAACAAAGTGATGATGTTTCTCAGAATGTAGAAATTGTAACAACATAG 450 0.4444 MEIVISLIILFVGIAILVIIHVCIVGRAFRGDTNDESGTEQGQNMNGMKRMLGGDNIDDLKNLPCFVYEEAAATERRGCSLVDCAVCLESFKVGDVCRLLPNCNHTFHVHCIDSWILHTPICPTCRTWVLSVTEQQSDDVSQNVEIVTT* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00742 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 130 IPR013083 -
Lapu9g00742 149 Pfam Ring finger domain 83 126 IPR001841 -
Lapu9g00742 149 SUPERFAMILY RING/U-box 62 138 - -
Lapu9g00742 149 SMART ring_2 84 125 IPR001841 -
Lapu9g00742 149 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 132 - -
Lapu9g00742 149 ProSiteProfiles Zinc finger RING-type profile. 84 126 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00742 Lapu-Chr9 9889930 9890379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00742 57 130 C3H Transcription Factor Family AT3G18930 45.122 6.00e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00742 - - vra:106760242 247.669